Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A11
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 576 GEGIVEECEARGS 538
           G G V EC+ARG+
Sbjct: 18  GTGAVVECQARGN 30


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 375 IYNATRL*NXFHGLPHNKMKYV 310
           IY+  R  N  HG P++   Y+
Sbjct: 220 IYSRVRNLNRTHGFPNDAQPYI 241


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 351 NXFHGLPHNKMKYVRV 304
           N F  LP+ K KY+ V
Sbjct: 313 NRFSSLPYYKYKYLNV 328


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 351 NXFHGLPHNKMKYVRV 304
           N F  LP+ K KY+ V
Sbjct: 313 NRFSSLPYYKYKYLNV 328


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -1

Query: 216 HDGKCPYISTDFYG 175
           HDG C Y+    +G
Sbjct: 95  HDGSCLYVPPGIFG 108


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = +1

Query: 196 IWTLSVML*TXMI*TIGFVVVREVLQCCLVVLNFKIYSNIFHFIV 330
           +W +S  + + ++  +     R   QC     +F IYS++  F +
Sbjct: 310 VWAISAAIGSPIVLGLNNTPDRTPDQCLFYNTDFIIYSSLSSFYI 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,667
Number of Sequences: 438
Number of extensions: 2023
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)