Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_A10
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 30 0.25
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.3
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 2.3
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 27 3.1
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 26 4.1
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 26 5.4
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 7.1
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 25 7.1
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 7.1
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 9.4
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 9.4
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 25 9.4
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 9.4
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = -2
Query: 354 GQMFRIHVTVTFPETAYVRISYVAP------FPVKLFIYIQLFCP 238
G + R++ FP AY+ +VAP PV FI+ +F P
Sbjct: 376 GSLIRLYFLTYFPTVAYMSFQFVAPPTGYEIIPVLWFIFFGIFIP 420
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/82 (21%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +2
Query: 269 LTGNGATY-EIRTYAVSGKVTVTCMRNICPS*TTYTRAPANLAATLSKTTIGRATTTRPN 445
LTGNG + + +VS + + + S TT T +P++ +++ S ++ ++++ +
Sbjct: 117 LTGNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSS 176
Query: 446 *ATSHSERASISKTAMESRNEA 511
++S S +S S ++ S + +
Sbjct: 177 SSSSSSSSSSSSSSSSSSSSSS 198
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +1
Query: 385 QSGSDAEQDDNWQSDDDSAKLSNVSFRKSFNIKNCDGITERSVDWQSDGEEIPLRAPVRS 564
+S A +DD SDD+ K S +K + E S S+ +EIPL
Sbjct: 919 KSQQKASEDDMSLSDDEE-KQSGKKKKKDRKKRKSKSKQESSDSGVSEDDEIPLSDARNK 977
Query: 565 VRKRR 579
+KRR
Sbjct: 978 TKKRR 982
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -1
Query: 424 SANCRLAQRRCQIGWCSCICCSGRT 350
+ +C A+ +C GW C+ C+ R+
Sbjct: 364 ACDCWDAEIQCSYGWIECVGCADRS 388
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 274 GKWRNIRDSYVRSLRKGYGYMYAKHLSFLNNIYKSTSQSGSDAEQDDNWQSDDDSAKLSN 453
GK + + RSL G ++ H FLN I+ T++ G Q ++D A ++
Sbjct: 1141 GKEQTFGTLFSRSLALIGGKLHYGHPDFLNTIF-MTTRGGVSKAQKGLHVNEDIYAGMT- 1198
Query: 454 VSFRKSFNIKNCD 492
+ ++ IK+CD
Sbjct: 1199 -ALQRGGRIKHCD 1210
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +1
Query: 358 LNNIYKSTSQSGSDAEQDDNWQSDDDSAKLSNVSFRKSFNIKN 486
+ + Y S S S ++ + N+ +DD+ S FN+ N
Sbjct: 587 IKSTYIDDSSSNSPSDIESNYSADDNEISKSKAQNAIDFNVTN 629
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 365 TYTRAPANLAATLSKTTIGRATTTRPN*ATSHSERASISKT 487
TYT N +T++ T T+T+P+ TS + + + T
Sbjct: 223 TYTVTATNGGSTITSTGASTVTSTQPSTVTSTQRKNTATTT 263
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 331 YMYAKHLSFLNNIYKSTSQSGSDAEQDDNWQSDD 432
Y Y FL +I + +S + +DD+W DD
Sbjct: 428 YYYLPDPLFLRSITLTDLESATSYFKDDSWMDDD 461
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 439 AKLSNVSFRKSFNIKNCDGITERSVDW-QSDGEEI 540
A L + K +I NCD ++ ++DW +S G ++
Sbjct: 523 AVLRGLKELKRIDIINCDSVSRDAIDWARSKGMQV 557
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 151 MKILNINIANRTHGQRYPGYSSTTSPI*PRAEKLDVYKKL 270
M ILNI I + + +PG+S TS + E+ +VY L
Sbjct: 107 MAILNI-ILSTDFPEYWPGFSEYTSNLVHSTERCEVYAGL 145
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 352 SFLNNIYKSTSQSGSDAEQDDNWQSDDDSAKLS 450
S NN+Y S G DN+Q D S KLS
Sbjct: 390 SSANNVYYENSYQGVGTSMSDNYQLPDMS-KLS 421
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = -2
Query: 624 WFRERLXVLNLRNDFPTFPNTSDWSSERNLLAITLPVHASFRDSIAVFDIEALS 463
W R+R R++ P P + SS + + +SF D + FD+ ++
Sbjct: 110 WIRKRKKKELRRDELPLVPESFTISSSYPIQRSSTQTRSSFEDDSSDFDLSEVT 163
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 349 LSFLNNIYKSTSQSGSDAEQDDNWQSDDDSAKLSNVS 459
LS N + +G D ++D++++D A +SN S
Sbjct: 826 LSQFGNDKSFGNAAGQDVIEEDDYETDQQDASISNKS 862
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,738
Number of Sequences: 5004
Number of extensions: 54952
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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