Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A10
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 313 LRKGYGYMYAKHLSFLNNIYKSTSQSGSDAEQDDNWQSDDDS 438
           L   +GY  A  L F    Y +   SG    +++ W+++++S
Sbjct: 311 LLMSFGYCIATLLEFAGVHYFTKVGSGEIPLEEEEWENENES 352


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 441 QTEQRLIQKELQYQKLRWNHGTKRGLAE*WRGDSSQSSSQK 563
           +T ++L      + ++  +HG KR  +  W GDS + S  +
Sbjct: 678 KTTEKLSTDPNTHFQVNQSHGIKRSGSHSWEGDSFKVSKHE 718


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 377 APANLAATLSKTTIGRATTTRPN*ATSHSERAS 475
           APA    T++ TT    TTT      + ++ AS
Sbjct: 653 APATTITTITTTTTTTTTTTTTTTTPNTTQNAS 685


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/46 (23%), Positives = 18/46 (39%)
 Frame = +1

Query: 493 GITERSVDWQSDGEEIPLRAPVRSVRKRRKIIPEIEYVEPLAEPTC 630
           G    S+ W+ D   +P+    +       II  +E +   A  TC
Sbjct: 516 GYPIESIVWERDTRVLPINRKQKVFPNGTLIIENVERMSDQATYTC 561


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,586
Number of Sequences: 438
Number of extensions: 4129
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)