Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_A10
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi... 30 1.5
At4g02110.1 68417.m00282 BRCT domain-containing protein contains... 29 2.7
At3g52010.1 68416.m05705 serine carboxypeptidase S10 family prot... 29 2.7
At2g05850.1 68415.m00634 serine carboxypeptidase S10 family prot... 29 2.7
At1g67140.1 68414.m07638 expressed protein 29 2.7
At3g03750.2 68416.m00381 SET domain-containing protein low simil... 28 6.1
At3g03750.1 68416.m00380 SET domain-containing protein low simil... 28 6.1
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 28 6.1
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 28 6.1
At5g48240.1 68418.m05960 hypothetical protein 27 8.1
At5g36820.1 68418.m04411 F-box family protein contains Pfam PF00... 27 8.1
At5g36730.1 68418.m04395 F-box family protein contains Pfam PF00... 27 8.1
At4g34370.1 68417.m04883 IBR domain-containing protein similar t... 27 8.1
At4g32380.1 68417.m04611 glycoside hydrolase family 28 protein /... 27 8.1
At4g12780.1 68417.m02005 auxilin-related low similarity to SP|Q2... 27 8.1
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2... 27 8.1
At4g10200.1 68417.m01672 hAT dimerisation domain-containing prot... 27 8.1
At4g02720.1 68417.m00368 expressed protein temporary automated f... 27 8.1
At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein con... 27 8.1
At2g34410.1 68415.m04217 O-acetyltransferase family protein simi... 27 8.1
At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10 ... 27 8.1
At1g27000.1 68414.m03292 bZIP family transcription factor 27 8.1
At1g16250.1 68414.m01946 kelch repeat-containing F-box family pr... 27 8.1
At1g08410.1 68414.m00930 GTP-binding family protein contains Pfa... 27 8.1
>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587, post-transcriptional control of
chloroplast gene expression CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 991
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 280 WRNIRDSYVRSLRKGYGYMYAKHLSFLNNIYKS-TSQSGSDAEQDDNWQSDDDSA 441
++ +RD+YV + R+ + K +S + +S+SG + E D+ S++D A
Sbjct: 936 FKAVRDAYVSANRQDLADVVKKEMSIAFEAERECSSRSGEEEEDDEEENSEEDEA 990
>At4g02110.1 68417.m00282 BRCT domain-containing protein contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 1293
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 245 KSWMYIKSLTGNGATYEIRTYAVSGKVTVTCM 340
K W ++ TG+GA Y +R V G T+ C+
Sbjct: 1162 KKWRLVREKTGHGALYGLR-IVVYGDCTIPCL 1192
>At3g52010.1 68416.m05705 serine carboxypeptidase S10 family protein
similar to SP|P52711 Serine carboxypeptidase II-3
precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam
profile PF0450 serine carboxypeptidase
Length = 487
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 573 FPNTSDWSSERNLLAITLPVHASFRDSIAVFDIEALSE 460
F N W++E N+L + PV F S D+E L E
Sbjct: 143 FRNPYSWNNEANVLFLESPVTTGFSYSSNPIDLEELGE 180
>At2g05850.1 68415.m00634 serine carboxypeptidase S10 family protein
similar to SP|P52711 Serine carboxypeptidase II-3
precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam
profile PF0450 serine carboxypeptidase
Length = 487
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -2
Query: 639 CTAAGWFR-ERLXVLNLRNDFPT-FPNTSDWSSERNLLAITLPVHASFRDSIAVFDIEAL 466
C++ G+ E L + +D T + N W++E N+L P+ F S FD E
Sbjct: 119 CSSVGFGAFEELGPFRVHSDGKTLYRNPYSWNNEANMLFFEGPISVGFSYSSTPFDWEIF 178
Query: 465 SE 460
E
Sbjct: 179 GE 180
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 376 STSQSGSDAEQDDNWQSDDDSAKLSNVSFRKSFNIKNCDGITERSVDWQSD 528
ST +SG+D E+++ DDD SF S N++ + TE + + D
Sbjct: 1941 STVESGTDEEEEEEEDDDDDDWDTFQ-SFPASTNLEGSESKTESVAEEEPD 1990
>At3g03750.2 68416.m00381 SET domain-containing protein low
similarity to G9a [Homo sapiens] GI:287865; contains
Pfam profiles PF00856: SET domain, PF05033: Pre-SET
motif
Length = 354
Score = 27.9 bits (59), Expect = 6.1
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = -1
Query: 397 RCQIGWCSCICCSGRTDVSHTC 332
RC+ G+C C+ +G ++++ C
Sbjct: 149 RCEEGYCKCLAFAGMEEIANEC 170
>At3g03750.1 68416.m00380 SET domain-containing protein low
similarity to G9a [Homo sapiens] GI:287865; contains
Pfam profiles PF00856: SET domain, PF05033: Pre-SET
motif
Length = 338
Score = 27.9 bits (59), Expect = 6.1
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = -1
Query: 397 RCQIGWCSCICCSGRTDVSHTC 332
RC+ G+C C+ +G ++++ C
Sbjct: 149 RCEEGYCKCLAFAGMEEIANEC 170
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +1
Query: 265 KLNGKWRNIRDSYVRSLRKGYGYMYAKHLSFLNNIYKSTSQSGSDAEQDDNWQSDDDSAK 444
++NGKW + R KG + KH S ++ + T+ S D + N + +++ +
Sbjct: 212 EMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQ 271
Query: 445 LSNV 456
+ V
Sbjct: 272 FTTV 275
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +1
Query: 265 KLNGKWRNIRDSYVRSLRKGYGYMYAKHLSFLNNIYKSTSQSGSDAEQDDNWQSDDDSAK 444
++NGKW + R KG + KH S ++ + T+ S D + N + +++ +
Sbjct: 208 EMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQ 267
Query: 445 LSNV 456
+ V
Sbjct: 268 FTTV 271
>At5g48240.1 68418.m05960 hypothetical protein
Length = 339
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 397 DAEQDDNWQSDDDSAKLSNVSFRKSF----NI-KNCDGITERSVDWQSDGEE 537
D DD+ + DD+S K V+ R+ N+ N + I E D SDGE+
Sbjct: 61 DYNSDDDEEEDDESKKQPEVTIREKIFSDANMGPNYEEIGEEDNDENSDGED 112
>At5g36820.1 68418.m04411 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 410
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -2
Query: 624 WFRERLXVLNLRNDFPTFPNTSDWSSERNLLAITLPVHASFRDSIAVFDI 475
WF + + R D P F D+++ER + LP H+ D++ + +
Sbjct: 219 WFAREMYIHGPRIDLPDFLICFDFTTERFGPRLHLPFHSRCVDTVTLASV 268
>At5g36730.1 68418.m04395 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 410
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -2
Query: 624 WFRERLXVLNLRNDFPTFPNTSDWSSERNLLAITLPVHASFRDSIAVFDI 475
WF + + R D P F D+++ER + LP H+ D++ + +
Sbjct: 219 WFAREMYIHGPRIDLPDFLICFDFTTERFGPRLHLPFHSRCVDTVTLASV 268
>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
melanogaster}; contains Pfam profile PF01485: IBR domain
Length = 597
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 427 RSANCRLAQRRCQIGWCSCICCSGRTDVSHT 335
++ C L RC G C C C G T HT
Sbjct: 292 KNGGCNLV--RCICGQCFCWLCGGATGSDHT 320
>At4g32380.1 68417.m04611 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 354
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 349 DVSHTCNRNLS*DCVRTNLVCCAISR*AFYIHPTFL 242
D+SH+ N N+ ++T C AI R ++ I+ T++
Sbjct: 101 DISHSQNINIMSSTIKTGDDCVAIKRNSYNINVTYV 136
>At4g12780.1 68417.m02005 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 485
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 371 TRAPANLAATLSKTTIGRATTTRPN*ATSHSERASISKTAMESRNEAWTG 520
TR AAT + + RA + A +ERA++ + E+R A G
Sbjct: 138 TREARERAATEAHAKVQRAAVGKATDARERAERAAVQRAHAEARERAAAG 187
>At4g12770.1 68417.m02004 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 909
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 371 TRAPANLAATLSKTTIGRATTTRPN*ATSHSERASISKTAMESRNEAWTG-RVMARRFLS 547
TR AAT + + RA + A +ERA++ + E+R A G R A + +
Sbjct: 555 TREARERAATEAHAKVQRAAVGKVTDARERAERAAVQRAHAEARERAAAGAREKAEKAAA 614
Query: 548 ELQSEVLGNV 577
E + V
Sbjct: 615 EARERANAEV 624
>At4g10200.1 68417.m01672 hAT dimerisation domain-containing protein
/ transposase-related low similarity to transposase
[Ipomoea purpurea] AB004906 GI:4063770
Length = 733
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 369 YVVQEGQMFRIHVTVTFPETAYVR 298
++V++G M R+H FP+TA +R
Sbjct: 78 FLVEKGPMKRVHEKYAFPKTAGIR 101
>At4g02720.1 68417.m00368 expressed protein temporary automated
functional assignment
Length = 422
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/67 (20%), Positives = 31/67 (46%)
Frame = +1
Query: 337 YAKHLSFLNNIYKSTSQSGSDAEQDDNWQSDDDSAKLSNVSFRKSFNIKNCDGITERSVD 516
+ K+ +L+ Y++ +SGSD++++ S ++ + + RKS + D
Sbjct: 10 FGKNHGYLDRDYRNGRRSGSDSDEELKGLSHEEYRRQKRLKMRKSAKFCFWENTPSPPRD 69
Query: 517 WQSDGEE 537
D +E
Sbjct: 70 QNEDSDE 76
>At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
thaliana]
Length = 582
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 99 EAFISEVSKHPQIWDLNNEDFKYKHRKQNA 188
E SE K P IWD + F + R QNA
Sbjct: 50 EGATSEGGKSPSIWDYFSHTFPERTRMQNA 79
>At2g34410.1 68415.m04217 O-acetyltransferase family protein similar
to O-acetyltransferase (GI:17016934) [Homo sapiens];
contains 11 transmembrane domains
Length = 540
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 11 RPSLVLCVTRQYRMLTLFIVPNDFVLFRHR 100
+P +LC+ +Y ML +V +VL HR
Sbjct: 464 QPKWLLCIIPEYPMLNFMLVTAIYVLVSHR 493
>At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10
family / APC10 family contains Pfam PF03256:
Anaphase-promoting complex, subunit 10 (APC10) domain;
similar to anaphase promoting complex subunit APC10
(GI:6463666) [Homo sapiens]
Length = 192
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +1
Query: 397 DAEQDDNWQSDDDSAKLSNVSFRKSFNIKNCDGITERSVDWQSDGEEIPLRAPVRSVR-- 570
D + WQSD L N+ F+K ++ + VD++ D P + +R+
Sbjct: 52 DDNLETYWQSDGLQPHLINIQFQKKVKLQ----LVVLYVDFKLDESYTPSKISIRAGDGF 107
Query: 571 KRRKIIPEIEYVEPLAEPTCSSTGED 648
K I +E V+P S +G D
Sbjct: 108 HNLKEIKSVELVKPTGWVCLSLSGTD 133
>At1g27000.1 68414.m03292 bZIP family transcription factor
Length = 304
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 322 GYGYMYAKHLSFLNNIYKSTSQSGSDAEQDDNWQSDDDSAKLSNVSFRKSFNIKNCDGIT 501
GYGYM+ K LSF + +Y T + + A + + S L+ + I+N D
Sbjct: 107 GYGYMWWKGLSFTDLMY-VTKANMAAAVANLTKNLEQVSETLAAAKRHLTQRIQNLDDKV 165
Query: 502 ERSVD 516
E+ +D
Sbjct: 166 EKQID 170
>At1g16250.1 68414.m01946 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 383
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 203 PDIHQRLRRYDPGQKSWMYIKSLTGNGATYEIRTYAVSGKVTVTCMRNICPS 358
P + + + R+DP +K W + S+ T+ T +VSGKV V RN+ S
Sbjct: 129 PVVTKDVMRFDPFKKQWKMVASMR-TPRTHFACT-SVSGKVYVAGGRNLTHS 178
>At1g08410.1 68414.m00930 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 589
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 87 CLDIEAFISEVSKHPQIWDLNNEDFKYKHRKQNAWAEVSRI 209
C D+EA+ E+ +H +I L N+ + WAE R+
Sbjct: 185 CPDLEAYAQEIDEHKKIMLLVNKADLLPTDVREKWAEYFRL 225
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,889,179
Number of Sequences: 28952
Number of extensions: 289605
Number of successful extensions: 1068
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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