Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_A03
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 134 1e-32
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 50 2e-07
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 33 0.048
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 3.1
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 26 4.1
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 26 5.5
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 26 5.5
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 25 7.2
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 9.5
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 9.5
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 134 bits (323), Expect = 1e-32
Identities = 65/129 (50%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
Frame = +1
Query: 262 LEELFAKFN-APAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGS 438
L +L+A F E+ GR RDW VDL+PKFLMANG L +LI+T VTRY+EFK I GS
Sbjct: 48 LTQLYALFRPGEQRPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGS 107
Query: 439 YVYKGGKISKVPVDQKEALASDLMGMFXKRRFRNFLIYVQXFQXEDAXTWXDFDPSTANM 618
YVY+ G+I+KVP ++ EAL S LM +F KRR + FL +V ++ +D T+ D + +M
Sbjct: 108 YVYRDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSM 167
Query: 619 QSLYDKFGL 645
+S++ KFGL
Sbjct: 168 ESVFKKFGL 176
Score = 85.8 bits (203), Expect = 5e-18
Identities = 38/46 (82%), Positives = 42/46 (91%)
Frame = +3
Query: 117 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASI 254
MDEEYDVIVLGTGL EC+LSG+LSV GKKVLHIDRN YYG +SAS+
Sbjct: 1 MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASL 46
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 50.4 bits (115), Expect = 2e-07
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = +3
Query: 129 YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 257
YDVI++GT L+ ILS LS + ++VLHID N +YG S+T
Sbjct: 7 YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLT 49
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 346 PKFLMANGLLVKLLIHTGVTRYLEFKSIEG-SYVYKGGKISKVPVDQKEALASDLMGMFX 522
P+ + A+ LVKLL T + +YL K + + KVP + + + + +
Sbjct: 104 PQEIFASSELVKLLSETKIYKYLLLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLAS 163
Query: 523 KRRFRNFLIYVQXFQXE 573
KR F+ +V E
Sbjct: 164 KRIVMRFMKFVSNIADE 180
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 32.7 bits (71), Expect = 0.048
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 123 EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 224
++ D+I++G G+ C L L G+KVL ++R+
Sbjct: 4 QDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 262 LEELFAKFNAPAPDETYGRGRDWNVDLIPKF 354
L L K A AP +TY + W +PKF
Sbjct: 32 LRSLIEKEEAAAPPKTYEDFKFWKTQPVPKF 62
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 184 CRFLGRRFCTSIAISTTVVNLRQL 255
CR L R+F ++ +ST++V ++QL
Sbjct: 116 CRILTRKFRLAVYLSTSLVYIKQL 139
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 292 PAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV 402
P P + G + + V F++ANG L+K LIH +
Sbjct: 14 PRPAQALGINQPF-VSAYLSFVLANGFLLKWLIHYSI 49
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 25.8 bits (54), Expect = 5.5
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = -3
Query: 519 KHAHKIRRKSFFLIDRYFGDFSTFVNITSFDGLKLQVPGDARVNKQFD*QSISHQKLRNQ 340
K +HK+ ++S FL D + DF+ F+ I D + Q + R +F S + +R++
Sbjct: 378 KFSHKMLKRSQFLNDHFDADFN-FIQI-DHDPITNQ---ETRKPVKF---SKPTKDIRSR 429
Query: 339 V-NVPVSTSTVCFIRCRCVELSEQLL 265
+ VP ST IR ++L E+ L
Sbjct: 430 LKEVPTSTDEEFIIRQELMDLLEKCL 455
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 138 IVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 245
IV+G GL + + G VL +D+N +GG S
Sbjct: 42 IVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGGNS 77
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 383 CLFTRASPGTWSLSPSKEVMFTKVEKS 463
C+F R S TWS+ S M ++ KS
Sbjct: 487 CVFIRTSMQTWSMFRSTHSMKQEIAKS 513
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 128 FFIHYDSVKDQLDLTNYWLKKCQNVGTENGKMSAIDDVAXMN 3
F ++ DS + + N +C N+ TE + S+ D+VA N
Sbjct: 404 FMLYKDSCNRKSNQKNVGTIRCSNLCTEIVEYSSPDEVAVCN 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,124
Number of Sequences: 5004
Number of extensions: 53915
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -