Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_A03
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30272| Best HMM Match : GDI (HMM E-Value=0) 146 2e-35
SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 9e-10
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 58 5e-09
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 30 1.4
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 29 4.4
SB_22674| Best HMM Match : DUF590 (HMM E-Value=0.049) 28 7.6
SB_15141| Best HMM Match : RVT_1 (HMM E-Value=1.1) 28 7.6
>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
Length = 1199
Score = 146 bits (353), Expect = 2e-35
Identities = 72/143 (50%), Positives = 98/143 (68%), Gaps = 6/143 (4%)
Frame = +1
Query: 241 NLRQLPRLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV-TRYLE 417
+L L +L E F + + P ++ G+ RD+NVDLIPKFLMA+G LVK+L+HTGV T+Y+
Sbjct: 45 SLHPLNQLYETFGRTDFPG--DSLGKPRDYNVDLIPKFLMADGTLVKILVHTGVATKYMN 102
Query: 418 FKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFXKRRFRNFLIYVQXFQXEDAXTWXD- 594
FK IEGS+VY+GG + KVP ++KEAL S LMG+F KRRFRNFLI+ + E+A TW D
Sbjct: 103 FKQIEGSFVYRGGSVHKVPANEKEALNSSLMGIFEKRRFRNFLIFALGVEPENASTWKDY 162
Query: 595 ----FDPSTANMQSLYDKFGLXR 651
FDP M ++ + L +
Sbjct: 163 AGGNFDPKKTTMNDVFKAYDLSQ 185
Score = 84.6 bits (200), Expect = 6e-17
Identities = 36/49 (73%), Positives = 44/49 (89%)
Frame = +3
Query: 117 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPL 263
MD EYD +VLGTGLKEC+LSG+LS++ KKVLH+DRNKYYGG+ AS+ PL
Sbjct: 1 MDAEYDYVVLGTGLKECVLSGLLSLNKKKVLHMDRNKYYGGDCASLHPL 49
>SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 60.9 bits (141), Expect = 9e-10
Identities = 26/34 (76%), Positives = 31/34 (91%)
Frame = +3
Query: 162 ECILSGMLSVSGKKVLHIDRNKYYGGESASITPL 263
ECILSG LSV+GKKVLH+D K+YGGE+AS+TPL
Sbjct: 19 ECILSGALSVAGKKVLHMDSQKFYGGETASLTPL 52
Score = 50.8 bits (116), Expect = 9e-07
Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Frame = +1
Query: 253 LPRLEELFAKFNAPAPDET----YGRGRDWNVDLIPKFLMANGL 372
L L +LF KFN P E +GR RDWNVDL+PKF+MA G+
Sbjct: 49 LTPLSQLFDKFNRSMPKEEIEKRFGRERDWNVDLVPKFIMAGGI 92
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 58.4 bits (135), Expect = 5e-09
Identities = 29/55 (52%), Positives = 37/55 (67%)
Frame = +3
Query: 126 EYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLRGAVR*VQR 290
EYD IVLGTGL E +++ LS G KVLH+DRN YY + AS T G ++ +QR
Sbjct: 7 EYDAIVLGTGLPEAVVAAALSRIGLKVLHLDRNDYYSSQWASFT-FDGLLKWIQR 60
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/77 (32%), Positives = 42/77 (54%)
Frame = +1
Query: 322 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALAS 501
R +N+DL PK L++ G LV+ LI ++ Y EFK++ + G + VP + + +S
Sbjct: 323 RQFNIDLAPKLLLSRGALVESLISANISHYAEFKAVNQILTFLEGSMEAVPCSRSDVFSS 382
Query: 502 DLMGMFXKRRFRNFLIY 552
L+ + KR FL +
Sbjct: 383 KLIPVIEKRLLMKFLTF 399
>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +3
Query: 123 EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 239
+E D +V+G+G+ + +L+ +GKK+L ++++ GG
Sbjct: 84 DEVDAVVIGSGIGGMTCASLLAKTGKKILVLEQHDQAGG 122
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 377 SNCLFTRASPGTWSLSPSKEVMFTKVEKSPKYL 475
SNC+ T+ S T L P+K+V+ + + PK L
Sbjct: 693 SNCINTKDSDQTTKLRPNKDVIMDEPHRDPKQL 725
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3
Query: 540 VAETPLXKHAHKIRRKSFFLIDRYFGDFSTFVNITSFDGLKLQVP 406
V++T L ++ IR I+ YFG+ + VNI D K QVP
Sbjct: 735 VSDTSLPEYTSVIRN-----IEEYFGNLTASVNILEVDLTKCQVP 774
>SB_22674| Best HMM Match : DUF590 (HMM E-Value=0.049)
Length = 243
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 187 RFLGRRFCTSIAISTTVVNLRQLPRLEELFAKFNAP 294
R+LG CT ++ + NLR LPR ++ A++ P
Sbjct: 13 RYLGPHKCTRA--TSVLTNLRALPRSSQIHARYLGP 46
>SB_15141| Best HMM Match : RVT_1 (HMM E-Value=1.1)
Length = 402
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -3
Query: 333 VPVSTSTVCFIRCRCVELSEQLL*AG*LTQIH---HR-STYCDRCAKPSSQKPTTC 178
V VS+ST C I + S++ L + Q+H H+ ST + C KP+S+ TC
Sbjct: 91 VYVSSSTSCPIVFHALMTSQRTLTSDDPPQLHLANHQWSTINEGCTKPASEYDVTC 146
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,871,818
Number of Sequences: 59808
Number of extensions: 397710
Number of successful extensions: 836
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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