Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A02
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          159   2e-39
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                129   2e-30
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             108   4e-24
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                57   1e-08
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     44   1e-04
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              38   0.005
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.088
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               33   0.27 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.9  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              29   2.5  
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)                      29   3.3  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        29   3.3  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    29   4.4  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)           28   7.6  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  159 bits (385), Expect = 2e-39
 Identities = 68/157 (43%), Positives = 106/157 (67%)
 Frame = +3

Query: 150 YKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVT 329
           Y  G +DKRT+ K+E+EA E  + ++  +W LD  + ER++G T+++    F+T   + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225

Query: 330 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFXXGISXNGQTREHALLAFTLGVKQL 509
           ++DAPGH+ F+ NMI+G +QAD  VL+++A  GEF  G    GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285

Query: 510 IVRVNKMDSTEPPYSEPXFXEIXXEVSSYIKKIGYNP 620
           ++ VNKMD     ++E  + EI  +++ ++KK+G+NP
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  129 bits (311), Expect = 2e-30
 Identities = 58/60 (96%), Positives = 59/60 (98%)
 Frame = +3

Query: 210 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQ 389
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  108 bits (259), Expect = 4e-24
 Identities = 48/84 (57%), Positives = 63/84 (75%)
 Frame = +3

Query: 282 IDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFXXGISXNGQ 461
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEF  G    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 462 TREHALLAFTLGVKQLIVRVNKMD 533
           TREHA+L  +LGV QLIV +NK+D
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLD 84


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/28 (92%), Positives = 26/28 (92%)
 Frame = +2

Query: 65  MGKEKTHINIVVIGHVDSGKSTTTGHLI 148
           M KEK HINIVVIGHVDSGKSTTTGHLI
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLI 28



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +3

Query: 150 YKCGGIDKRTIXKFEKEAXEM 212
           YKCGGIDKRTI KFEKE+ E+
Sbjct: 29  YKCGGIDKRTIEKFEKESSEV 49


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +3

Query: 195 KEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMI 374
           +EA  +     K     D ++ ER+RGI++  ++  F      + I+D PGH+DF ++  
Sbjct: 38  QEAGAVKSNKIKKGATSDFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTF 97

Query: 375 TGTSQADCAVLIVAAGTG 428
              +  D  ++++    G
Sbjct: 98  RTLTAVDSVIVVIDVAKG 115


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 29/117 (24%), Positives = 49/117 (41%)
 Frame = +3

Query: 249 KLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 428
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A    
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100

Query: 429 EFXXGISXNGQTREHALLAFTLGVKQLIVRVNKMDSTEPPYSEPXFXEIXXEVSSYI 599
                     QT EH      + +K +++  NK+D  +   ++  + +I   V   I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 24/70 (34%), Positives = 33/70 (47%)
 Frame = +3

Query: 324 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFXXGISXNGQTREHALLAFTLGVK 503
           +T ID PGH  F      G +  D  VL+VAA  G     +    ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTV----ESIRHAMHAKV---- 129

Query: 504 QLIVRVNKMD 533
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 24/87 (27%), Positives = 35/87 (40%)
 Frame = +3

Query: 273 GITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFXXGISX 452
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA           
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADD-------DV 175

Query: 453 NGQTREHALLAFTLGVKQLIVRVNKMD 533
             QT+E    A   GV  +I  +NK+D
Sbjct: 176 MPQTKEAISHAQAAGV-PIIFAINKID 201


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 330 IIDAPGHRDFIKNMITGTSQADCAVLIV 413
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
 Frame = +3

Query: 246 DKLKAERERGITIDIALWKFETXK-------------YYVTIIDAPGHRDFIKNMITG 380
           DK    +ERGIT+D+    F+                  +T++D PGH   IK +I G
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG 122


>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
          Length = 737

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/75 (26%), Positives = 30/75 (40%)
 Frame = -2

Query: 368 VLDEISVSRSINDGNIVLXSFELPESNIDCDTTLTLSL*FVQYPSIFEGSFTHFXGLLLE 189
           V   I ++ + N    V  +     +  D  TT+T S     YPS+   +  +F      
Sbjct: 316 VASSIQLNITSNTTVEVNDTLRTTSTTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSV 375

Query: 188 LXDGTFVNTTTFVES 144
           + D T  N TT V S
Sbjct: 376 VFDSTTPNATTLVPS 390



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 275 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVES 144
           TT+T S     YPS+   +  +F      + D T  N TT V+S
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQS 591


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = -2

Query: 368 VLDEISVSRSINDGNIVLXSFELPESNIDCDTTLTLSL*FVQYPSIFEGSFTHFXGLLLE 189
           V   I ++ + N    V  +     +++   TT+T S     YPS+ + +  +F      
Sbjct: 4   VASSIQLNITSNTTMAVNDTLRTTSTSVVFPTTITPSPNITSYPSLMKSAVGNFTSATSV 63

Query: 188 LXDGTFVNTTTFVESS 141
           + D T  N T  V SS
Sbjct: 64  VVDSTTPNATRLVPSS 79



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = -2

Query: 374 DHVLDEISVSRSINDGNIVLXSFELPESNIDCDTTLTLSL*FVQYPSIFEGSFTHFXGLL 195
           + V   I +S + N    V  + +   ++    TT+T S     YPS+   +  +F    
Sbjct: 605 ESVASSIQLSITSNTTMAVNDTLKTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSAT 664

Query: 194 LELXDGTFVNTTTFVESS 141
             + D T  N T  V SS
Sbjct: 665 SVVVDSTTPNATRLVPSS 682


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 240  VLDKLKAERERGITI 284
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 65  MGKEKTHINIVVIGHVDSGKSTTTGHLI 148
           M K+    N+ VI HVD GKST T  L+
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLV 39



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 318 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 428
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 275 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVES 144
           TT+T S     YPS+   +  +F      + D T  N TT V S
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPS 279



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 275 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVES 144
           TT+T S     YPS+   +  +F      + D T  N TT V S
Sbjct: 437 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPS 480


>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
          Length = 572

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 275 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVES 144
           TT+T S     YPS+   +  +F      + D T  N TT V S
Sbjct: 18  TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPS 61



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 275 TTLTLSL*FVQYPSIFEGSFTHFXGLLLELXDGTFVNTTTFVES 144
           TT+T S     YPS+   +  +F      + D T  N TT V S
Sbjct: 420 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPS 463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,059,747
Number of Sequences: 59808
Number of extensions: 330294
Number of successful extensions: 669
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)