Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A02
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   324   6e-91
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   314   6e-88
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   266   1e-73
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   233   1e-63
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    33   0.002
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.4  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  324 bits (795), Expect = 6e-91
 Identities = 155/168 (92%), Positives = 155/168 (92%)
 Frame = +3

Query: 150 YKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVT 329
           YKCGGIDKRTI KFEKEA EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT
Sbjct: 29  YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 88

Query: 330 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFXXGISXNGQTREHALLAFTLGVKQL 509
           IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF  GIS NGQTREHALLAFTLGVKQL
Sbjct: 89  IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 148

Query: 510 IVRVNKMDSTEPPYSEPXFXEIXXEVSSYIKKIGYNPXAVAFVPISGW 653
           IV VNKMDSTEPPYSE  F EI  EVSSYIKKIGYNP AVAFVPISGW
Sbjct: 149 IVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 196



 Score = 60.1 bits (139), Expect = 2e-11
 Identities = 27/28 (96%), Positives = 27/28 (96%)
 Frame = +2

Query: 65  MGKEKTHINIVVIGHVDSGKSTTTGHLI 148
           MGKEK HINIVVIGHVDSGKSTTTGHLI
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLI 28


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  314 bits (770), Expect = 6e-88
 Identities = 150/168 (89%), Positives = 152/168 (90%)
 Frame = +3

Query: 150 YKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVT 329
           YKCGGIDKRTI KFEKEA EMGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT
Sbjct: 29  YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVT 88

Query: 330 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFXXGISXNGQTREHALLAFTLGVKQL 509
           IIDAPGHRDFIKNMITGTSQADCAVLIVAAG GEF  GIS NGQTREHALLAFTLGVKQL
Sbjct: 89  IIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQL 148

Query: 510 IVRVNKMDSTEPPYSEPXFXEIXXEVSSYIKKIGYNPXAVAFVPISGW 653
           IV VNKMD T+PPYSE  F EI  EVSSYIKKIGYN  +VAFVPISGW
Sbjct: 149 IVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISGW 196



 Score = 60.1 bits (139), Expect = 2e-11
 Identities = 27/28 (96%), Positives = 27/28 (96%)
 Frame = +2

Query: 65  MGKEKTHINIVVIGHVDSGKSTTTGHLI 148
           MGKEK HINIVVIGHVDSGKSTTTGHLI
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLI 28


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  266 bits (652), Expect = 1e-73
 Identities = 128/139 (92%), Positives = 128/139 (92%)
 Frame = +3

Query: 237 WVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 416
           WVLDKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 417 AGTGEFXXGISXNGQTREHALLAFTLGVKQLIVRVNKMDSTEPPYSEPXFXEIXXEVSSY 596
           AGTGEF  GIS NGQTREHALLAFTLGVKQLIV VNKMDSTEPPYSE  F EI  EVSSY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 597 IKKIGYNPXAVAFVPISGW 653
           IKKIGYNP AVAFVPISGW
Sbjct: 121 IKKIGYNPAAVAFVPISGW 139


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  233 bits (570), Expect = 1e-63
 Identities = 112/123 (91%), Positives = 112/123 (91%)
 Frame = +3

Query: 285 DIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFXXGISXNGQT 464
           DIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF  GIS NGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 465 REHALLAFTLGVKQLIVRVNKMDSTEPPYSEPXFXEIXXEVSSYIKKIGYNPXAVAFVPI 644
           REHALLAFTLGVKQLIV VNKMDSTEPPYSE  F EI  EVSSYIKKIGYNP AVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 645 SGW 653
           SGW
Sbjct: 121 SGW 123


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 324 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 428
           VT +D PGH  FI     G    D  VL+VAA  G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229



 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 77  KTHINIVVIGHVDSGKST 130
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 86  INIVVIGHVDSGKST 130
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 309 TXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 410
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 309 TXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 410
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,505
Number of Sequences: 438
Number of extensions: 2940
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)