Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A01
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    31   0.15 
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         26   4.1  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   7.2  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   9.5  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   9.5  

>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 41/157 (26%), Positives = 59/157 (37%), Gaps = 16/157 (10%)
 Frame = +1

Query: 184 LFHYGQLTCEWHTGITXLLIPERXCCLVXYIEGYWLGSPCXL*FFYLGSYKQYSXLXP-- 357
           +F YG LT EW + I   L P     L   ++   L S     F +  + K         
Sbjct: 40  IFRYGFLTWEWTSAIRSALHPLIFAALYRVLQVLKLDSSY---FVFTNAPKLLQGTFAAI 96

Query: 358 -XYSFYKWT----GGR--KWALFLILTSWFWFYTSGRTLLQTTETALVAIALSVF----P 504
             Y  YK+     G +   W L   L S    Y   RT   + ET L +I    F     
Sbjct: 97  LDYGTYKFALVRYGSKTANWTLACSLVSIMNAYVGVRTFSNSLETTLTSIGFYYFSYYLK 156

Query: 505 FXSGKLGYYDKXNTS---WIWLAVIAVFLRPTSAPLW 606
           + +       K  +S   +I +A  A F+RPT+  +W
Sbjct: 157 YENSSPEQRKKAYSSLLGFISVAAFACFIRPTNILVW 193


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 443 AEHCSRLQRQLLWQSPYLFFHSXVENLDIMIKXTHHGYG 559
           A H      + LW+ PY  FHS   +L ++    H   G
Sbjct: 219 ALHVEHQTPENLWRLPYSSFHSKNSHLVVLTHGMHSNVG 257


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 151 TGTPWKWPINNLFHYGQLTC 210
           TG  W WPI  L  + + TC
Sbjct: 753 TGRKWLWPIKCLGRFCEATC 772


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 12  YRRQVLLEAGEWCWQRV 62
           Y +++LL  G WC+QR+
Sbjct: 947 YLKKLLLVHGSWCYQRL 963


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 400 LFLILTSWFWFYTSGRTLLQTTETALVAIALSVFPFXSGKLGYYDK 537
           LF  ++  +W YTS  ++L  T  +++++A     +  G L  +DK
Sbjct: 307 LFRKVSRQYWPYTSENSVLANTPQSIISLAAQSCGYL-GLLHLFDK 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,930
Number of Sequences: 5004
Number of extensions: 53618
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)