Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A01
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482...    28   0.027
11_01_0642 + 5167229-5167310,5168203-5168336,5169627-5169676,517...    28   7.5  

>01_05_0461 +
           22446797-22447050,22447171-22447288,22447895-22448217,
           22448908-22449056,22449324-22449463,22449606-22449757,
           22449862-22450021,22450071-22450088
          Length = 437

 Score = 27.9 bits (59), Expect(2) = 0.027
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 400 LFLILTSWFWFYTSGRTLLQTTETALVAIAL 492
           LF  L +WF F+   RTL  + ET L    L
Sbjct: 125 LFSQLVNWFMFFCITRTLSNSMETVLTVTGL 155



 Score = 27.1 bits (57), Expect(2) = 0.027
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 184 LFHYGQLTCEWHTGITXLLIPERXCCLVXYIEGYWLGSPCXL*FFYL 324
           +F YG LT EW  G+   L P     L   +    L SP  + F  L
Sbjct: 83  VFGYGHLTWEWKRGLRSYLHPFIFAALYKILSLLHLDSPWFMLFSQL 129


>11_01_0642 +
           5167229-5167310,5168203-5168336,5169627-5169676,
           5170786-5170816,5172298-5172489,5172490-5172612,
           5173002-5173172
          Length = 260

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 180 VYGPLPRCA-STRQEHTQVLTKNTESILTN 94
           V+G L +   S R  H++ LTK TESI+ N
Sbjct: 96  VFGKLQKSRLSRRPGHSETLTKETESIIEN 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,258,184
Number of Sequences: 37544
Number of extensions: 380637
Number of successful extensions: 873
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)