Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A01
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical pr...    57   1e-08
AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alph...    57   1e-08
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical
           protein T27F7.3a protein.
          Length = 496

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 29/73 (39%), Positives = 43/73 (58%)
 Frame = +1

Query: 412 LTSWFWFYTSGRTLLQTTETALVAIALSVFPFXSGKLGYYDKXNTSWIWLAVIAVFLRPT 591
           L+SWF FY + RTL  + ET+L  IAL+ FPF +     +      +I L V+ + +RPT
Sbjct: 124 LSSWFVFYCAPRTLSNSLETSLTLIALNWFPFETKN---FKGPTWPYIALGVLTIIIRPT 180

Query: 592 SAPLWAVLTIYNL 630
            A +W V  +Y+L
Sbjct: 181 VALIWLVFGVYHL 193


>AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alpha 2
           mannosyltransferaseprotein.
          Length = 496

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 29/73 (39%), Positives = 43/73 (58%)
 Frame = +1

Query: 412 LTSWFWFYTSGRTLLQTTETALVAIALSVFPFXSGKLGYYDKXNTSWIWLAVIAVFLRPT 591
           L+SWF FY + RTL  + ET+L  IAL+ FPF +     +      +I L V+ + +RPT
Sbjct: 124 LSSWFVFYCAPRTLSNSLETSLTLIALNWFPFETKN---FKGPTWPYIALGVLTIIIRPT 180

Query: 592 SAPLWAVLTIYNL 630
            A +W V  +Y+L
Sbjct: 181 VALIWLVFGVYHL 193


>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical protein
            F59F3.5 protein.
          Length = 1199

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -3

Query: 558  PYP*CVXFIIISKFSTXEWKNR*GDCHKSCLCSLEQCSA*SIEPEP 421
            PYP C  F ++    T     R  +CHK     ++ C   S +  P
Sbjct: 1104 PYPDCPNFSLVEYIKTGNINKRPSNCHKDVYKIMKMCWQASPDDRP 1149


>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 362 TVSINGQEVGSGLCSSFSHLGSGSILQAEHCSRL 463
           T+ +NG  VGS  C +  H+ S    Q  HCS++
Sbjct: 643 TIPVNGH-VGSRCCPTKQHICSQPPQQGNHCSKI 675


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,173,673
Number of Sequences: 27780
Number of extensions: 315616
Number of successful extensions: 860
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)