Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_A01
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14850.2 68418.m01742 mannosyltransferase, putative similar t...    57   1e-08
At5g14850.1 68418.m01741 mannosyltransferase, putative similar t...    57   1e-08
At1g61065.1 68414.m06875 expressed protein                             32   0.38 
At5g50140.1 68418.m06210 ankyrin repeat family protein contains ...    29   2.7  
At4g37640.1 68417.m05324 calcium-transporting ATPase 2, plasma m...    28   6.2  
At1g71680.1 68414.m08271 lysine and histidine specific transport...    27   8.2  

>At5g14850.2 68418.m01742 mannosyltransferase, putative similar to
           PIGB from Homo sapiens [gi:1552169], Mus musculus
           [gi:7634741]
          Length = 529

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 9/165 (5%)
 Frame = +1

Query: 184 LFHYGQLTCEWHTGITXLLIPERXCCLVXYIEGYWLGSPCXL*FFYLGSYKQYSXLXPXY 363
           +F YG +T EW  GI   L P     L   ++   L +P  +          +S +   Y
Sbjct: 76  IFGYGYMTWEWKRGIRSYLHPMLFAFLYKLLQVTGLDTPYIMIKAPRLMQSIFSAIGDLY 135

Query: 364 SFYKWT----GGR--KWALFLILTSWFWFYTSGRTLLQTTETALVAIALSVFP-FXSGKL 522
             YK +    GG    W+LF  + +WF F+   RT     ET L  + L  +P      +
Sbjct: 136 -LYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTFSNCLETVLTIMGLYYWPCIRDSSI 194

Query: 523 GYYDKXNTSW-IWLAVIAVFLRPTSAPLWAVLTIYNL-LTTNXSK 651
            Y    N  W + +A +A  +RPTSA +W  + +  L LT N  K
Sbjct: 195 DY--PVNRKWGLVIAALACAIRPTSAVIWLYVGMLELFLTPNKVK 237



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 141 PDEYWHTLEVAHK 179
           PDE+W +LEVAH+
Sbjct: 62  PDEHWQSLEVAHR 74


>At5g14850.1 68418.m01741 mannosyltransferase, putative similar to
           PIGB from Homo sapiens [gi:1552169], Mus musculus
           [gi:7634741]
          Length = 548

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 9/165 (5%)
 Frame = +1

Query: 184 LFHYGQLTCEWHTGITXLLIPERXCCLVXYIEGYWLGSPCXL*FFYLGSYKQYSXLXPXY 363
           +F YG +T EW  GI   L P     L   ++   L +P  +          +S +   Y
Sbjct: 76  IFGYGYMTWEWKRGIRSYLHPMLFAFLYKLLQVTGLDTPYIMIKAPRLMQSIFSAIGDLY 135

Query: 364 SFYKWT----GGR--KWALFLILTSWFWFYTSGRTLLQTTETALVAIALSVFP-FXSGKL 522
             YK +    GG    W+LF  + +WF F+   RT     ET L  + L  +P      +
Sbjct: 136 -LYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTFSNCLETVLTIMGLYYWPCIRDSSI 194

Query: 523 GYYDKXNTSW-IWLAVIAVFLRPTSAPLWAVLTIYNL-LTTNXSK 651
            Y    N  W + +A +A  +RPTSA +W  + +  L LT N  K
Sbjct: 195 DY--PVNRKWGLVIAALACAIRPTSAVIWLYVGMLELFLTPNKVK 237



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 141 PDEYWHTLEVAHK 179
           PDE+W +LEVAH+
Sbjct: 62  PDEHWQSLEVAHR 74


>At1g61065.1 68414.m06875 expressed protein
          Length = 180

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 379 TGGRKWALFLILTSWFWFYTSGRTLL 456
           +G R WA+FL +T+W +F+ +   LL
Sbjct: 84  SGSRSWAIFLFITTWVFFFIAQVCLL 109


>At5g50140.1 68418.m06210 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 535

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 424 FWFYTSGRTLLQTTETALVAIALSVFPFXSGKLGYYDKXNTSWIWLAVIAV 576
           F  ++   ++   T   +V + LS+ PF +  L  +       IWLAVIA+
Sbjct: 407 FKVFSVSNSIALFTSLCIVILLLSIIPFRTKSLKTFLIITHKMIWLAVIAM 457


>At4g37640.1 68417.m05324 calcium-transporting ATPase 2, plasma
           membrane-type / Ca(2+)-ATPase isoform 2 (ACA2) identical
           to SP|O81108 Calcium-transporting ATPase 2, plasma
           membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2)
           {Arabidopsis thaliana}
          Length = 1014

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 79  GLFYIIRENTFCILSENLRMFLTSTGTPWKW 171
           GLF+ +   TF +L + + M   STGT W W
Sbjct: 359 GLFFAVV--TFAVLVQGMFMRKLSTGTHWVW 387


>At1g71680.1 68414.m08271 lysine and histidine specific transporter,
           putative similar to lysine and histidine specific
           transporter GB: AAC49885 GI:2576361 from (Arabidopsis
           thaliana); contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 434

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 403 FLILTSWFWFYTSGRTLLQTTETALVAIALSVFPFXSGKLGYY 531
           +L+ T  F   T+ R + ++T  AL+ +     PF  G LG++
Sbjct: 342 YLVKTLKFTPSTTLRLVARSTYVALICLVAVCIPFFGGLLGFF 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,341,846
Number of Sequences: 28952
Number of extensions: 295959
Number of successful extensions: 742
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)