Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P24
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    27   1.8  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   9.3  
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    25   9.3  

>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 485 LRNVDSVIGAQRHRLEILRNLCTR*WLN 402
           L NVD+ +  +RH   +L  LCTR  LN
Sbjct: 502 LENVDNTVWDKRHWAILLPRLCTRGLLN 529


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 147 WAVSLSTHLRKHTMPLQTMACQLPQT*VYKKMFK 248
           W  S  TH+RK++   + M C+ P+  +Y K+ K
Sbjct: 99  WPAS-ETHVRKYSSQKKRMVCETPE--MYLKVTK 129


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 582 TERPRSESVLSLER 541
           TERPR ES+L L R
Sbjct: 17  TERPRKESILDLSR 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,949
Number of Sequences: 5004
Number of extensions: 47446
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)