Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P24
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0071 - 20491521-20492813                                         29   4.2  
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706...    27   9.7  
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847...    27   9.7  

>03_05_0071 - 20491521-20492813
          Length = 430

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -1

Query: 410 WLNANLTLLRRTKMHFRTFTSIV*YVLIRCSRHVLR*NNMLRTWLTDYVR 261
           +L+A LTLLRR   H R   ++V Y      RH +  N+     LT++V+
Sbjct: 72  FLDAFLTLLRRAHRHSRIAATVV-YNEFIADRHHVHMNSTRWATLTEFVK 120


>06_01_0916 +
           7058991-7059050,7060057-7061235,7061778-7063481,
           7063557-7064432,7064457-7064660,7065039-7065143,
           7065407-7065496,7066066-7066176,7066349-7066780
          Length = 1586

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = +3

Query: 456 CANNRVDVTKKSLEV-------LLHRDVTLVTCGHNARAKERFRTEVVQLRYRSRNR 605
           CANN ++V  KS  V       +LH   +    G  A +KERFR  +    + + NR
Sbjct: 284 CANNDLEVPVKSSSVASTESQTVLHAPTSADFGGETAGSKERFRQRLWCFLFENLNR 340


>04_03_0977 +
           21381857-21383757,21384299-21384458,21384669-21384717,
           21385117-21385169
          Length = 720

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 633 KIGIQKSKTNGFLIYNVTERPRSESVLS 550
           K+G+Q+    G  IYNV   P+ E +++
Sbjct: 486 KVGVQQQVEEGMQIYNVDTPPQDEDLIA 513


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,808,266
Number of Sequences: 37544
Number of extensions: 279432
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)