Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P24
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)                   32   0.46 
SB_13473| Best HMM Match : DUF1040 (HMM E-Value=1.5)                   30   1.4  
SB_23613| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_13597| Best HMM Match : PH (HMM E-Value=1.1)                        27   9.9  
SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)             27   9.9  

>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
          Length = 648

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -3

Query: 114 SDFH-YVLCNIYFRIVYKTLTSRXFVAKFV 28
           +DFH Y  C ++ R+V+ TLTS   +AKF+
Sbjct: 223 TDFHSYFGCTVHARVVFTTLTSLDGLAKFI 252


>SB_13473| Best HMM Match : DUF1040 (HMM E-Value=1.5)
          Length = 154

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 534 GHNARAKERFRTEVVQLRYRSRNRWFSTFVF 626
           GH A    R R E+  +R+ +R  WF++ +F
Sbjct: 112 GHRAELPYRLRCEIQFMRFSTRRPWFASMLF 142


>SB_23613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +3

Query: 453 LCANNRVDVTK----KSLEVLLHRDVTLVTCGHNARAKERFRTEVVQLRYRSRNRWF 611
           LC  N VD++K    +  EV   RD+TL+ C   + + ++       L     NRW+
Sbjct: 380 LCKENSVDLSKTEESRDEEVCKGRDLTLMLCVWESPSHDQLGQPTCHLGIFDINRWY 436


>SB_13597| Best HMM Match : PH (HMM E-Value=1.1)
          Length = 160

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 299 NNMLRTWLTDYVRPVKDFKHFFIDLSL 219
           ++ ++ WL+D    V+D K+ FIDL +
Sbjct: 73  SHRVQEWLSDVNEKVQDVKYIFIDLDI 99


>SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)
          Length = 406

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 217 GSWHAIVCKGIVCLRRWVDKLTAHL 143
           G+WH  V KG  CL+R  +K T HL
Sbjct: 269 GNWHMPVVKGGGCLKRQFNK-TCHL 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,909,827
Number of Sequences: 59808
Number of extensions: 343563
Number of successful extensions: 705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)