Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P24
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.3  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   4.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.7  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 19  KNENELSYEXSRS*CFVDYSKINIT*HVMKIA 114
           KNE++       S C +DY K +IT +++  A
Sbjct: 106 KNEDKCLTAQKFSRCVIDYVKFHITQYMISNA 137


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 488 FLRNVD-SVIGAQRHRLEILRNLCTR*WLNANLTLLRRTKMHFRTFTSIV*YVLI 327
           F+ N +  ++G    R EI  N C   +++    ++ R +  +  F  IV  VLI
Sbjct: 191 FITNGEWDLLGVPGKRNEIYYNCCPEPYIDITFVVIIRRRTLYYFFNLIVPCVLI 245


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 156 SLSTHLRKHTMPLQTMAC 209
           +L  H+R HT+P +   C
Sbjct: 31  ALKMHIRTHTLPCKCHLC 48


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 135 LNTRWAVSLSTHLRKHTMPLQTMACQL 215
           LNTR   +L+  LR    P     C L
Sbjct: 132 LNTRLQATLNCGLRLEKFPFDVQECPL 158


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 180 HTMPLQTMACQLPQ 221
           H+M L+T+ C LP+
Sbjct: 619 HSMELRTLPCLLPR 632


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 180 HTMPLQTMACQLPQ 221
           H+M L+T+ C LP+
Sbjct: 587 HSMELRTLPCLLPR 600


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,948
Number of Sequences: 438
Number of extensions: 3529
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)