Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_P20
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 266 1e-72
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 30 0.25
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 29 0.77
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 28 1.4
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 26 5.5
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 7.2
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 7.2
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 9.5
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 9.5
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 266 bits (653), Expect = 1e-72
Identities = 122/184 (66%), Positives = 150/184 (81%)
Frame = +3
Query: 99 PLPXFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGC 278
P P FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A +F +
Sbjct: 8 PAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAERNA 67
Query: 279 EVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLF 458
+V+ STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G+ FRGLF
Sbjct: 68 QVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLF 127
Query: 459 IIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRXGAKTIKPDTKAA 638
+ID K LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW G+ TI DTK
Sbjct: 128 LIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI--DTKNP 185
Query: 639 QEYF 650
++YF
Sbjct: 186 EKYF 189
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 548 LHQPQGLLHRPPHGQVVDGDL-PEVLLVVDDEESSEGDARLLVQ 420
L Q Q L + ++ D DL PEV ++ +EES G++R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 28.7 bits (61), Expect = 0.77
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 610 LAPXLQLAGHTSPCLSVNWN 551
L P +L HT PC SV WN
Sbjct: 174 LKPKYRLTKHTQPCTSVCWN 193
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 474 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEV 581
+NL++I + LPVG +++ LR V T K+G++
Sbjct: 92 KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDI 129
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 96 NPLPXFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 230
+P P F+ + +G+F S + K K V L YP TF TE
Sbjct: 270 SPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 341 QAGRTRSHEHPSDKRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRP 505
+A R+ H H + + H R S G H +LH QA+P A ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 184 TTYFPL*SDREMSLNSPLTTAVALXLGSGFGHLQ 83
T F + D++M +N L TAV GSG G Q
Sbjct: 1444 TGAFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQ 1477
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 348 GGLGPMNIPLISDKS 392
GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -3
Query: 646 YSCAALVSGLMVLAPXLQLAGHTSPCLSVNWNACTSRRVSSTDLPTGRSLMV 491
Y LV + L ++ + +P L VN CT+ +S + RSL V
Sbjct: 644 YESDKLVITPLSCTEMLNISSYVNPSLGVNMLYCTNSYISLAKMSEIRSLNV 695
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,067
Number of Sequences: 5004
Number of extensions: 36977
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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