Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P20
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   272   1e-73
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)             155   4e-38
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)             123   1e-28
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   2e-14
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)                47   1e-05
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           31   0.82 
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7)                   28   7.6  
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)           28   7.6  
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)                28   7.6  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  272 bits (668), Expect = 1e-73
 Identities = 124/173 (71%), Positives = 144/173 (83%), Gaps = 1/173 (0%)
 Frame = +3

Query: 99  PLPXFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIG 275
           P P F  TAV  +GEF D+ LSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++ DEF+ I 
Sbjct: 56  PAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRVDEFKAIN 115

Query: 276 CEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGL 455
           CEV+  S DS ++HLAW N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+  RGL
Sbjct: 116 CEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGL 175

Query: 456 FIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRXGAKT 614
           FIIDDK  LRQITINDLPVGRSV+ETLRL+QAFQFTDKHGEVCPA WR GA T
Sbjct: 176 FIIDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 228


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score =  155 bits (375), Expect = 4e-38
 Identities = 70/95 (73%), Positives = 82/95 (86%)
 Frame = +3

Query: 330 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLP 509
           N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+  RGLFIIDDK  LRQITINDLP
Sbjct: 3   NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62

Query: 510 VGRSVEETLRLVQAFQFTDKHGEVCPANWRXGAKT 614
           VGRSV+ETLRL+QAFQFTDKHGEVCPA WR GA T
Sbjct: 63  VGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 97


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score =  123 bits (297), Expect = 1e-28
 Identities = 53/76 (69%), Positives = 64/76 (84%)
 Frame = +3

Query: 99  PLPXFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGC 278
           P P ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR I  
Sbjct: 59  PAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRAINT 118

Query: 279 EVLGASTDSHFTHLAW 326
           EV+G S DS FTHLAW
Sbjct: 119 EVVGCSVDSVFTHLAW 134



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = +3

Query: 450 GLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKH 572
           GLFIIDDK  LRQIT+NDLPVGRSV+ETLRLVQAFQ+TDKH
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKH 175


>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 33/47 (70%), Positives = 38/47 (80%)
 Frame = +3

Query: 510 VGRSVEETLRLVQAFQFTDKHGEVCPANWRXGAKTIKPDTKAAQEYF 650
           VGRSV+ETLRLVQAFQ+TDKHGEVCPA W+ G  TI PD    ++YF
Sbjct: 1   VGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIIPDPTQKKKYF 47


>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
 Frame = +3

Query: 288 GASTDSHFTHLAWINTPRKQG-----GLGPMNIPLISDKSHRISRDYGVLD----EETGI 440
           G S D   +H  W+    K            N P+I+D+   ++   G++D    +  G+
Sbjct: 3   GLSCDDAESHRGWVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGL 62

Query: 441 PF--RGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRXGAK- 611
           P   R +FII   + L+   +     GR+ +E LR++ + Q T       P +W+ G   
Sbjct: 63  PLTCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKLGGDC 122

Query: 612 TIKPDTKAAQE 644
            + P  K  +E
Sbjct: 123 MVIPSIKPEEE 133


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +3

Query: 378 ISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGR-SVEE--TLRLVQ 548
           + DKS    R +  LD+  GI   G  ++ +  N+ +ITIN+    +  ++   TL  V 
Sbjct: 137 VQDKSG--IRIFSDLDDAHGIIDFGKRLLTEDTNIIEITINNTSTTQVKIKRFSTLEEVP 194

Query: 549 AFQFTDKHG 575
            F F+DKHG
Sbjct: 195 EFSFSDKHG 203


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 353 TRSHEHPSDKRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQ 499
           T SH+ P     +  + P ++ +     HP      H  QA P+A HH+
Sbjct: 799 TSSHDMPRTSMPLVSYPPHMKKSPFVVHHPPDSASRHGNQA-PEAHHHE 846


>SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7)
          Length = 282

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 551 RLHQPQGL---LHRPPHGQVVDGDLPEVLLVVDDEESSEG 441
           RL+ P+GL   LH P  G+      P+ + VVDDE  SEG
Sbjct: 23  RLNVPEGLKSALHIPGIGERKGQTDPDEIPVVDDEFLSEG 62


>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
          Length = 334

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 384 DKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI--TIND 503
           D    ++  Y V+D+ET I   GL  I +K+N +++  T ND
Sbjct: 275 DTIREVNCRYNVVDKETRIKVTGLLTIKEKKNGKELYRTRND 316


>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 368 HPSDKRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQR 502
           +P D R++  H      +G   G P+ R     RQ +  ADHHQR
Sbjct: 586 YPHDGRRLFAH-SLSDDSGTRQGCPIQRHGQPGRQLQTIADHHQR 629


>SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)
          Length = 1123

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 551 RLHQPQGL---LHRPPHGQVVDGDLPEVLLVVDDEESSEG 441
           RL+ P+GL   LH P  G+      P+ + VVDDE  SEG
Sbjct: 23  RLNVPEGLKSALHIPGIGERKGQTDPDEIPVVDDEFLSEG 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,115,194
Number of Sequences: 59808
Number of extensions: 318706
Number of successful extensions: 1157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)