Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P19
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces...    52   5e-08
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   2.0  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    27   2.6  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        26   4.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   6.1  

>SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
 Frame = +2

Query: 191 VLCSRQVTLVPDKSLTEALAEK---QQYDAVILPXXXXXXXXXXXXXXVGALLKDHXDNG 361
           V  SR V +  ++S  E  +     +QYD  I+P              V  ++K+     
Sbjct: 44  VKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKP 103

Query: 362 KXXXXXXXXXXXXXXHGVARGRRVTSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPG 541
                                +++T +PS R +L  G Y Y++ + VV++ N++TS+GPG
Sbjct: 104 NKWIGMICAGTLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLD-QPVVLEENLITSQGPG 162

Query: 542 TAYWFGLTLI 571
           TA  FGL L+
Sbjct: 163 TAMLFGLKLL 172


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 276 ITASYC-CFSARASVSDLSGTRVTCLEHSTGDEPSKPARVTV 154
           +  ++C  F+  AS+ + +GT+  CL H     P+  + +TV
Sbjct: 714 MACAFCKTFAYLASIEEKNGTKTACLSHKDECFPNTDSDLTV 755


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = -1

Query: 354 SSWSLSRAPTXSDLERLSDPXKPXGRITASYCCFSARASVSDLSGTRVTCLEHS 193
           SSWSLS + +    + LSD       +      F    S++  S +      HS
Sbjct: 68  SSWSLSSSDSIMSYDSLSDDVSVLSFLDCPLTTFETAPSIASFSNSAADVSSHS 121


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 437 TSRAGPSPRRGLQTLWEQHKW 375
           T+ +G SP   L  LW+ H W
Sbjct: 41  TANSGMSPTHKLPALWDGHVW 61


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 49  LNQRTMSKSALVILAQGCXGDGDS 120
           L+QR      LVIL  GC G G+S
Sbjct: 375 LSQRASEVMPLVILITGCEGIGES 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,846,875
Number of Sequences: 5004
Number of extensions: 29836
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)