Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_P19
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0313 - 19475203-19475244,19475883-19475976,19476933-194771... 89 2e-18
01_01_0826 + 6431621-6431917,6432356-6432505,6432614-6432796,643... 72 3e-13
05_06_0103 + 25597531-25597608,25597692-25597892,25598599-255987... 60 1e-09
01_01_0824 + 6411899-6411931,6412001-6412210,6412302-6412451,641... 53 1e-07
04_04_1546 - 34301905-34302093,34302549-34302911,34303031-343034... 38 0.006
02_01_0558 + 4109929-4110042,4110989-4111097,4111404-4111563,411... 31 0.89
03_02_0695 + 10472174-10472286,10472390-10473239 29 2.0
02_05_0230 + 27029725-27030871,27030995-27031113,27031225-270313... 28 6.2
04_04_0053 + 22389227-22389613,22390528-22390981,22391618-223916... 27 8.2
>06_03_0313 -
19475203-19475244,19475883-19475976,19476933-19477129,
19477254-19477394,19477873-19478073,19478775-19478894,
19479677-19479859,19479946-19480095,19481305-19481508,
19481545-19481547
Length = 444
Score = 89.0 bits (211), Expect = 2e-18
Identities = 55/159 (34%), Positives = 84/159 (52%), Gaps = 1/159 (0%)
Frame = +2
Query: 107 EMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVILPX 286
EME + +D+LRR V +A LE + ++ SR+V +V D L +AL KQQYD ++LP
Sbjct: 231 EMEATMIIDILRRAKANVVVASLEETLEIVASRKVKMVADVLLDDAL--KQQYDLILLPG 288
Query: 287 XXXXXXXXXXXXXVGALLKDHXDNGK-XXXXXXXXXXXXXXHGVARGRRVTSYPSTRDKL 463
+ L+K + K HG+ +G++ TS+P +KL
Sbjct: 289 GLGGAQAYAKSDKLIGLIKKQAEANKLYGAICASPAIALEPHGLLKGKKATSFPGMWNKL 348
Query: 464 SAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLIXLL 580
S D + + RVVVDGN++TS+GPGT+ F L ++ L
Sbjct: 349 S--DQSECK-NRVVVDGNLITSQGPGTSMEFSLAIVEKL 384
Score = 75.4 bits (177), Expect = 3e-14
Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
Frame = +2
Query: 110 METVITVDMLRRGGVTVTLAGLE-GSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVILPX 286
ME VITVD+LRR G V++A ++ GS+ V + V L D +L + LA+ + +D + LP
Sbjct: 13 MEAVITVDVLRRAGADVSVASVDPGSAQVGGAWGVKLAAD-ALLDDLADAE-FDLISLPG 70
Query: 287 XXXXXXXXXXXXXVGALLKDHXDNGKXXXXXXXXXXXXXXH-GVARGRRVTSYPSTRDKL 463
+ ++K H GK G+ G + T YPS DKL
Sbjct: 71 GMPGSSNLRDCKLLENMVKKHAGKGKLYAAICAAPAVALGSWGLLNGLKATCYPSFMDKL 130
Query: 464 SAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLIXLL 580
+ + VE RV +DGN VTSRGPGTA + + L+ L
Sbjct: 131 PS-EVNAVES-RVQIDGNCVTSRGPGTAMEYSVVLVEQL 167
>01_01_0826 +
6431621-6431917,6432356-6432505,6432614-6432796,
6433305-6433385,6433548-6433586,6433646-6433849,
6433933-6434073,6434270-6434437,6434498-6434518
Length = 427
Score = 72.1 bits (169), Expect = 3e-13
Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Frame = +2
Query: 107 EMETVITVDMLRRGGVTVTLAGLEGSSPVLCSR-QVTLVPDKSLTEALAEKQQYDAVILP 283
EME + +D+LRR G VT+A +E V+ R + L+ D + EA K+++D +++P
Sbjct: 261 EMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEEAA--KREFDLIVMP 318
Query: 284 XXXXXXXXXXXXXXVGALLKDHXDNGKXXXXXXXXXXXXXX-HGVARGRRVTSYPSTRDK 460
+ LLK ++ K HG+ +G++ TS+P
Sbjct: 319 GGLPGAQKLSSTKVLVDLLKKQAESNKPYGAICASPAYVLEPHGLLKGKKATSFPPMAHL 378
Query: 461 LSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLIXLL 580
L+ D + + RVVVDGN++TS+ PG+A F L ++ L
Sbjct: 379 LT--DQSACDS-RVVVDGNLITSKAPGSATEFALAIVEKL 415
Score = 54.0 bits (124), Expect = 8e-08
Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Frame = +2
Query: 110 METVITVDMLRRGGVTVTLAGLEGSSP-----VLCSRQVTLVPDKSLTEALAEKQQYDAV 274
+E T D+L R G VT+A + + V + V LV D + + E + +D +
Sbjct: 39 VEAAATADVLNRAGARVTVATADPAGDDRGLLVEAAFGVKLVADGRVADL--EGEAFDLI 96
Query: 275 ILPXXXXXXXXXXXXXXVGALLKDHXDNGKXXXXXXXXXXXXXXH-GVARGRRVTSYPST 451
LP + ++K + G H G+ +G + T YPS
Sbjct: 97 ALPGGMPGSANLRDCKVLEKMVKKQAEQGGLYAAICATPAVTLAHWGLLKGLKATCYPSF 156
Query: 452 RDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLIXLL 580
+K +A RVVVD N VTS+GP TA + L L+ L
Sbjct: 157 MEKFTAEIIPV--NSRVVVDRNAVTSQGPATAIEYALALVEQL 197
>05_06_0103 +
25597531-25597608,25597692-25597892,25598599-25598748,
25598906-25599019,25599699-25599776,25600008-25600208,
25601312-25601399,25601432-25601742
Length = 406
Score = 60.1 bits (139), Expect = 1e-09
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Frame = +2
Query: 107 EMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVILPX 286
EME ++ D+LRR V V LA +E S+ ++ S+++ +V DK +++A A +YD +ILP
Sbjct: 218 EMEIIMLTDVLRRANVNVVLASVEKSTSIVGSQRMRIVADKCISDASA--LEYDLIILPG 275
Query: 287 XXXXXXXXXXXXXVGALLKDHXDNGKXXXXXXXXXXXXXXHG----------------VA 418
+ LLK+ G+ V
Sbjct: 276 GPAGAERLHKSSVLKKLLKEQKQTGRMYEAGFTPGDILGLKTLGILYSLAWKITAIEIVD 335
Query: 419 RGRRVTSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLI 571
+ + VT++PS ++L+ ++ +VV+DGN++T G GT F L +I
Sbjct: 336 QDKTVTAHPSIVNQLTC---EVIDRSKVVIDGNLITGMGLGTVIDFSLAII 383
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/59 (44%), Positives = 31/59 (52%)
Frame = +2
Query: 107 EMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVILP 283
EME VI +LRR G VTLA +E V SR +V DK + A Q +D V LP
Sbjct: 37 EMEAVILAGVLRRAGADVTLASVEDGLEVEASRGSHIVADKRI--AACADQVFDLVALP 93
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 494 ERVVVDGNVVTSRGPGTAYWFGLTLIXLL 580
+R V G + TSRGPGTA+ F L+ + L
Sbjct: 140 KRKKVSGELTTSRGPGTAFQFALSFVEQL 168
>01_01_0824 +
6411899-6411931,6412001-6412210,6412302-6412451,
6413787-6413969,6417705-6417779,6417959-6418102,
6418233-6418418,6418515-6418694
Length = 386
Score = 53.2 bits (122), Expect = 1e-07
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 2/159 (1%)
Frame = +2
Query: 110 METVITVDMLRRGGVTVTLAGLE-GSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVILPX 286
+E + +D+LRR G VT+A + G V V +V D + +D ++LP
Sbjct: 23 VEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIVADALVAGGDCAAAHFDLIVLPG 82
Query: 287 XXXXXXXXXXXXXVGALLKDHXDNGKXXXXXXXXXXXXXXH-GVARGRRVTSYPSTRDKL 463
+ A+++ H G G+ G + T++P DK
Sbjct: 83 GVPGAANLGGCAALEAMVRRHAATGGLYAAICAAPPLALASWGMLNGLKATAHPLFVDKF 142
Query: 464 SAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLIXLL 580
+ V+ VVVD + VTSRGP T+ F L L+ L
Sbjct: 143 PP-EVAAVDAS-VVVDASAVTSRGPATSTEFALALVEQL 179
Score = 34.3 bits (75), Expect = 0.072
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +2
Query: 497 RVVVDGNVVTSRGPGTAYWFGLTLIXLL 580
RVVVDGNV+TS G GTA F + + L
Sbjct: 343 RVVVDGNVITSGGTGTAMEFAVAAVEKL 370
>04_04_1546 -
34301905-34302093,34302549-34302911,34303031-34303471,
34304331-34304447,34304540-34304593
Length = 387
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Frame = +2
Query: 251 EKQQYDAVILPXXXXXXXXXXXXXXVGALLKDHXDNGKXXXXXXXXXXXXXXHGVARGRR 430
+ YDA+++P + +L+K D K GV +GR+
Sbjct: 270 DASSYDALVIPGGRAPEYLALNDKVI-SLVKGFMDKAKPVASICHGQQILSAAGVLQGRK 328
Query: 431 VTSYPSTRDKLSAGDYTYVEG---ERVVVDGNVVTSRG-PG 541
T+YP+ + + G T++E +R DGN+VT PG
Sbjct: 329 CTAYPAVKLNVVLGGATWLEPNPIDRCFTDGNLVTGAAWPG 369
>02_01_0558 +
4109929-4110042,4110989-4111097,4111404-4111563,
4111721-4111796,4111984-4112109,4112233-4112484
Length = 278
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 101 AXEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPD 226
A ++ + DM+ RG ++ L L G SP L RQ VPD
Sbjct: 191 ALRVKVKMAEDMVARGALSCGLGHLGGLSPALNPRQACRVPD 232
>03_02_0695 + 10472174-10472286,10472390-10473239
Length = 320
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 461 LSAGDYTYVEGERVVVDGNVVTSR 532
L++ D Y+ G +VVDG V TSR
Sbjct: 292 LASDDSRYISGHNLVVDGGVTTSR 315
>02_05_0230 +
27029725-27030871,27030995-27031113,27031225-27031349,
27031491-27031590,27031680-27031757,27032818-27032901,
27033077-27033162,27033869-27034049,27034596-27034646
Length = 656
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 149 GVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVI 277
G T+ G GS+ LC+ +V + +AL+ +YD V+
Sbjct: 521 GQTLFCGGFAGSTAALCTTPFDVVKTRVQLQALSPISKYDGVL 563
>04_04_0053 +
22389227-22389613,22390528-22390981,22391618-22391673,
22391757-22391887,22391976-22392072,22393329-22393484
Length = 426
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 458 KLSAGDYTYVEGERVVVDGNVVTSRGPG 541
+L A Y V+G +V++D N SRG G
Sbjct: 215 ELFANKYRSVKGAKVIIDANTGRSRGYG 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,067
Number of Sequences: 37544
Number of extensions: 233824
Number of successful extensions: 567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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