Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P19
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06)                  28   6.4  

>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 60/157 (38%), Positives = 76/157 (48%)
 Frame = +2

Query: 101 AXEMETVITVDMLRRGGVTVTLAGLEGSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVIL 280
           A EME VIT D+LRRG V   +AGL G  PV+CSRQV              +  YDAVIL
Sbjct: 551 AEEMEAVITADVLRRGKVNTVVAGLTGPDPVVCSRQV--------------QGPYDAVIL 596

Query: 281 PXXXXXXXXXXXXXXVGALLKDHXDNGKXXXXXXXXXXXXXXHGVARGRRVTSYPSTRDK 460
           P              VG +L++  +                      GR V +       
Sbjct: 597 PGGLTGAQNLAKSDQVGQILREQYE---------------------AGRIVAA------- 628

Query: 461 LSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLTLI 571
           + AG YTY E +RVV DGN++TSRGPGTA+ FG+ L+
Sbjct: 629 ICAG-YTYSE-DRVVRDGNLITSRGPGTAFEFGIELV 663


>SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06)
          Length = 150

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
 Frame = -3

Query: 460 LVPGAGV*RHAPAPRHAVG---CKRYGSSTN----GSNDFPI 356
           +V  A    HAP PR AVG   C + GS TN    G ++FP+
Sbjct: 1   MVAMAATGAHAPCPRPAVGTCTCVQTGSYTNVKCLGLDEFPL 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,691,833
Number of Sequences: 59808
Number of extensions: 256610
Number of successful extensions: 641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)