Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_P16
(528 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M94314-1|AAC28251.1| 157|Homo sapiens ribosomal protein L30 pro... 83 6e-16
CR456729-1|CAG33010.1| 157|Homo sapiens RPL24 protein. 83 6e-16
BC070193-1|AAH70193.1| 157|Homo sapiens ribosomal protein L24 p... 83 6e-16
BC000690-1|AAH00690.1| 157|Homo sapiens ribosomal protein L24 p... 83 6e-16
AB061828-1|BAB79466.1| 157|Homo sapiens ribosomal protein L24 p... 83 6e-16
AL158815-1|CAI19461.1| 128|Homo sapiens se, the PEX6 gene for p... 81 3e-15
AM083292-1|CAL07438.1| 95|Homo sapiens immunoglobulin heavy ch... 31 1.9
AM081269-1|CAL05415.1| 101|Homo sapiens immunoglobulin heavy ch... 30 4.4
>M94314-1|AAC28251.1| 157|Homo sapiens ribosomal protein L30
protein.
Length = 157
Score = 83.0 bits (196), Expect = 6e-16
Identities = 39/53 (73%), Positives = 42/53 (79%)
Frame = +2
Query: 182 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAXRNMKPEV 340
++ WTVLYRRK KKGQ EE KKRT R KFQRAI GASL+DIMA RN KPEV
Sbjct: 48 QINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100
Score = 44.4 bits (100), Expect = 3e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 94 RPWLKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 249
R + + DGK F FLN+KCE+A L +RNPR N + + +KG K+
Sbjct: 19 RRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK 70
Score = 41.1 bits (92), Expect = 0.002
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3
Query: 39 MKIGLCAYSGYKIYPGHGKTMA 104
MK+ LC++SGYKIYPGHG+ A
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYA 22
>CR456729-1|CAG33010.1| 157|Homo sapiens RPL24 protein.
Length = 157
Score = 83.0 bits (196), Expect = 6e-16
Identities = 39/53 (73%), Positives = 42/53 (79%)
Frame = +2
Query: 182 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAXRNMKPEV 340
++ WTVLYRRK KKGQ EE KKRT R KFQRAI GASL+DIMA RN KPEV
Sbjct: 48 QINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100
Score = 44.4 bits (100), Expect = 3e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 94 RPWLKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 249
R + + DGK F FLN+KCE+A L +RNPR N + + +KG K+
Sbjct: 19 RRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK 70
Score = 41.1 bits (92), Expect = 0.002
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3
Query: 39 MKIGLCAYSGYKIYPGHGKTMA 104
MK+ LC++SGYKIYPGHG+ A
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYA 22
>BC070193-1|AAH70193.1| 157|Homo sapiens ribosomal protein L24
protein.
Length = 157
Score = 83.0 bits (196), Expect = 6e-16
Identities = 39/53 (73%), Positives = 42/53 (79%)
Frame = +2
Query: 182 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAXRNMKPEV 340
++ WTVLYRRK KKGQ EE KKRT R KFQRAI GASL+DIMA RN KPEV
Sbjct: 48 QINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100
Score = 44.4 bits (100), Expect = 3e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 94 RPWLKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 249
R + + DGK F FLN+KCE+A L +RNPR N + + +KG K+
Sbjct: 19 RRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK 70
Score = 41.1 bits (92), Expect = 0.002
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3
Query: 39 MKIGLCAYSGYKIYPGHGKTMA 104
MK+ LC++SGYKIYPGHG+ A
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYA 22
>BC000690-1|AAH00690.1| 157|Homo sapiens ribosomal protein L24
protein.
Length = 157
Score = 83.0 bits (196), Expect = 6e-16
Identities = 39/53 (73%), Positives = 42/53 (79%)
Frame = +2
Query: 182 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAXRNMKPEV 340
++ WTVLYRRK KKGQ EE KKRT R KFQRAI GASL+DIMA RN KPEV
Sbjct: 48 QINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100
Score = 44.4 bits (100), Expect = 3e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 94 RPWLKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 249
R + + DGK F FLN+KCE+A L +RNPR N + + +KG K+
Sbjct: 19 RRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK 70
Score = 41.1 bits (92), Expect = 0.002
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3
Query: 39 MKIGLCAYSGYKIYPGHGKTMA 104
MK+ LC++SGYKIYPGHG+ A
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYA 22
>AB061828-1|BAB79466.1| 157|Homo sapiens ribosomal protein L24
protein.
Length = 157
Score = 83.0 bits (196), Expect = 6e-16
Identities = 39/53 (73%), Positives = 42/53 (79%)
Frame = +2
Query: 182 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAXRNMKPEV 340
++ WTVLYRRK KKGQ EE KKRT R KFQRAI GASL+DIMA RN KPEV
Sbjct: 48 QINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEV 100
Score = 44.4 bits (100), Expect = 3e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 94 RPWLKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 249
R + + DGK F FLN+KCE+A L +RNPR N + + +KG K+
Sbjct: 19 RRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK 70
Score = 41.1 bits (92), Expect = 0.002
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3
Query: 39 MKIGLCAYSGYKIYPGHGKTMA 104
MK+ LC++SGYKIYPGHG+ A
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYA 22
>AL158815-1|CAI19461.1| 128|Homo sapiens se, the PEX6 gene for
peroxisomal biogenesis factorA, member 8) protein.
Length = 128
Score = 80.6 bits (190), Expect = 3e-15
Identities = 38/53 (71%), Positives = 41/53 (77%)
Frame = +2
Query: 182 KVTWTVLYRRKFKKGQEEEQAKKRTXRTQKFQRAIVGASLSDIMAXRNMKPEV 340
++ WTVLYRRK KKGQ EE KKRT R KFQRAI GASL+DI A RN KPEV
Sbjct: 48 QINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADITAKRNQKPEV 100
Score = 43.6 bits (98), Expect = 4e-04
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +1
Query: 94 RPWLKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 249
R + + DGK F FLN+KCE A L +RNPR N + + +KG K+
Sbjct: 19 RRYARTDGKVFQFLNAKCELAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKK 70
Score = 41.1 bits (92), Expect = 0.002
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3
Query: 39 MKIGLCAYSGYKIYPGHGKTMA 104
MK+ LC++SGYKIYPGHG+ A
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYA 22
>AM083292-1|CAL07438.1| 95|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 95
Score = 31.5 bits (68), Expect = 1.9
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 176 GFLLIKWAASHFEFRNVKVFPSTLSHGLAMAWIYFVSTIGAKSDL 42
G L + AAS F FRN V L+ G + W+ VS G +S L
Sbjct: 14 GSLRLSCAASGFTFRNYDVTWVRLAPGKGLEWVSGVSGSGGRSSL 58
>AM081269-1|CAL05415.1| 101|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 101
Score = 30.3 bits (65), Expect = 4.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 176 GFLLIKWAASHFEFRNVKVFPSTLSHGLAMAWIYFVSTIGA 54
G L + AASHF FRN + + G + W+ +S GA
Sbjct: 19 GSLRLSCAASHFTFRNYAMAWVRQAPGKGLEWVSTISASGA 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,894,522
Number of Sequences: 237096
Number of extensions: 1099600
Number of successful extensions: 4179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4179
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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