Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_P16
(528 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal pr... 43 1e-04
Z69646-4|CAD36489.1| 611|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z69646-3|CAA93476.2| 630|Caenorhabditis elegans Hypothetical pr... 28 3.6
AF497829-1|AAM18107.1| 611|Caenorhabditis elegans putative Na-H... 28 3.6
AF497828-1|AAM18106.1| 630|Caenorhabditis elegans putative Na-H... 28 3.6
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p... 28 4.8
Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical p... 28 4.8
Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical p... 28 4.8
AF016424-8|AAB65328.2| 467|Caenorhabditis elegans Hypothetical ... 27 6.3
>AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 24.1 protein.
Length = 159
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 185 VTWTVLYRRKFKKG---QEEEQAKKRTXRTQKFQRAIVGASLSDIMAXRN 325
+ WTVLYR K KKG QE+ KK Q RA+ G SL I+A RN
Sbjct: 49 IRWTVLYRIKNKKGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRN 98
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3
Query: 39 MKIGLCAYSGYKIYPGHGKTM 101
MK+ C YSGYKI+PGHGK +
Sbjct: 1 MKVETCVYSGYKIHPGHGKRL 21
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 103 LKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGR 237
++ DGK FL+ K +RRNPR + + +KG G+
Sbjct: 22 VRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNKKGTHGQ 66
>Z69646-4|CAD36489.1| 611|Caenorhabditis elegans Hypothetical
protein F57C7.2b protein.
Length = 611
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 158 WAASHFEFRNVKVFPSTLSHGLAMAWIYFVSTIGAKSDLHFD-LTKRKDL 12
WA H+ FR + TL +GL + ++ +G FD +TK K +
Sbjct: 61 WAFKHYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFDVITKNKTI 110
>Z69646-3|CAA93476.2| 630|Caenorhabditis elegans Hypothetical
protein F57C7.2a protein.
Length = 630
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 158 WAASHFEFRNVKVFPSTLSHGLAMAWIYFVSTIGAKSDLHFD-LTKRKDL 12
WA H+ FR + TL +GL + ++ +G FD +TK K +
Sbjct: 61 WAFKHYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFDVITKNKTI 110
>AF497829-1|AAM18107.1| 611|Caenorhabditis elegans putative Na-H
exchanger isoform 5b protein.
Length = 611
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 158 WAASHFEFRNVKVFPSTLSHGLAMAWIYFVSTIGAKSDLHFD-LTKRKDL 12
WA H+ FR + TL +GL + ++ +G FD +TK K +
Sbjct: 61 WAFKHYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFDVITKNKTI 110
>AF497828-1|AAM18106.1| 630|Caenorhabditis elegans putative Na-H
exchanger isoform 5a protein.
Length = 630
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 158 WAASHFEFRNVKVFPSTLSHGLAMAWIYFVSTIGAKSDLHFD-LTKRKDL 12
WA H+ FR + TL +GL + ++ +G FD +TK K +
Sbjct: 61 WAFKHYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFDVITKNKTI 110
>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
protein F49E2.5j protein.
Length = 1100
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 199 PVQAQVQKGPRGRTSKETYXKDPKVPTCD 285
PVQ QV++ + + SK+T + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571
>Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical
protein F49E2.5g protein.
Length = 528
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 199 PVQAQVQKGPRGRTSKETYXKDPKVPTCD 285
PVQ QV++ + + SK+T + K PT D
Sbjct: 460 PVQEQVKEQKKSKKSKKTSESESKRPTAD 488
>Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical
protein F49E2.5f protein.
Length = 611
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 199 PVQAQVQKGPRGRTSKETYXKDPKVPTCD 285
PVQ QV++ + + SK+T + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571
>AF016424-8|AAB65328.2| 467|Caenorhabditis elegans Hypothetical
protein F39G3.2 protein.
Length = 467
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = -1
Query: 201 RTVHVTLARIPPHQMGGFTF*IQ------ECEGFSIHFKPWSCHGLDIFCIHY 61
RT+ + + + P + GGFT +Q E ++ + W G+ F ++Y
Sbjct: 151 RTISLKVQEVHPKRKGGFTVCVQPVYWYSEYHNIALFIETWRSQGVTRFIVYY 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,365,899
Number of Sequences: 27780
Number of extensions: 166409
Number of successful extensions: 379
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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