Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P16
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    50   1e-06
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            50   1e-06
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ...    32   0.21 
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           29   1.5  
At2g35310.1 68415.m04330 transcriptional factor B3 family protei...    27   7.8  

>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
 Frame = +2

Query: 179 AKVTWTVLYRRKFKKGQEEEQAKKRTXRTQK-FQRAIVGASLSDIMAXRNMKPEV 340
           +K+ WT +YR++ KK   +E  K+R   T+K + R+IVGA+L  I   R  KPEV
Sbjct: 49  SKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 39 MKIGLCAYSGYKIYPGHG 92
          +K  LC +SG KIYPG G
Sbjct: 3  LKTELCRFSGQKIYPGRG 20


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
 Frame = +2

Query: 179 AKVTWTVLYRRKFKKGQEEEQAKKRTXRTQK-FQRAIVGASLSDIMAXRNMKPEV 340
           +K+ WT +YR++ KK   +E  K+R   T+K + R+IVGA+L  I   R  KPEV
Sbjct: 49  SKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 39 MKIGLCAYSGYKIYPGHG 92
          +K  LC +SG KIYPG G
Sbjct: 3  LKTELCRFSGQKIYPGRG 20


>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 815

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -1

Query: 318 LAIMSLSEAPTIARWNFWVLXVRFFACSSSWPFLNLRLYRTVHVTLARIPPHQMG 154
           +A M   +  TIA   F+   +  F+C SS P L    +  V VTL  IP  Q+G
Sbjct: 572 IAEMKKLKVLTIANHGFYPARLSNFSCLSSLPNLKRIRFEKVSVTLLDIPQLQLG 626


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 100 WLKVDGKTFTFLNSKCEAAHLMRRNPR 180
           +++ D K F F  SKC     M+RNPR
Sbjct: 21  FVRNDAKIFRFCRSKCHKNFKMKRNPR 47


>At2g35310.1 68415.m04330 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 288

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 203 YRRKF---KKGQEEEQAKKRTXRTQKFQRAIVGASLSDI 310
           Y+RK    KK  EE    KRT +    QR   GAS S +
Sbjct: 157 YKRKLNFEKKKAEESHNSKRTDKVFSVQRESAGASSSSV 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,912,901
Number of Sequences: 28952
Number of extensions: 160230
Number of successful extensions: 392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)