Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_P15
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 169 1e-42
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 158 2e-39
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 105 3e-23
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 42 2e-04
11_01_0526 - 4140853-4141017,4141416-4141619 28 3.8
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 27 8.8
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 27 8.8
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 169 bits (411), Expect = 1e-42
Identities = 77/98 (78%), Positives = 86/98 (87%), Gaps = 1/98 (1%)
Frame = +2
Query: 164 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-N 340
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 33 VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTAR 92
Query: 341 LLPSRQFGYLVLTTSGGIMDHEEARXKHLGGKILGFFF 454
LLPSRQFGY+VLTTS GIMDHEEAR K++GGK+LGFF+
Sbjct: 93 LLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/29 (79%), Positives = 29/29 (100%)
Frame = +1
Query: 67 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 153
MVR++VL+DALK+++NAEKRGKRQVLIRP
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRP 29
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 158 bits (384), Expect = 2e-39
Identities = 74/94 (78%), Positives = 81/94 (86%), Gaps = 1/94 (1%)
Frame = +2
Query: 164 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-N 340
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 33 VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTAR 92
Query: 341 LLPSRQFGYLVLTTSGGIMDHEEARXKHLGGKIL 442
LLPSRQFGY+VLTTS GIMDHEEAR K++GGK L
Sbjct: 93 LLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126
Score = 50.8 bits (116), Expect = 6e-07
Identities = 22/29 (75%), Positives = 29/29 (100%)
Frame = +1
Query: 67 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 153
MVR++VL+DALK+++NAEKRGKRQV+IRP
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRP 29
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 105 bits (251), Expect = 3e-23
Identities = 45/97 (46%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Frame = +2
Query: 164 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERW-TN 340
V+V FL +M GYI +FE++D HR GKI V L GR+ C ++ R D+ +IE++
Sbjct: 32 VMVSFLNIMKHRGYIKKFEVIDPHRVGKINVELHGRIKDCKALTYRQDIRAKEIEQYRVR 91
Query: 341 LLPSRQFGYLVLTTSGGIMDHEEARXKHLGGKILGFF 451
+LP+RQ+GY+V+TT G++DHEEA +++GG++LG+F
Sbjct: 92 MLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQVLGYF 128
Score = 31.5 bits (68), Expect = 0.41
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +1
Query: 82 VLSDALKSIHNAEKRGKRQVLIRP 153
+L+DAL+++ NAE+RGK L++P
Sbjct: 5 ILNDALRTMVNAERRGKATALLQP 28
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 224 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 325
VDDH++G+I++ GRLNK GVIS R DV + +
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 242 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 337
G++ + LNKCGVI+P I+D+ T
Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 61 LAMVRMNVLSDALKSIHNAEKRGKRQVLIRPXF 159
+ ++ L+ + K H+ +KRGKR+V RP F
Sbjct: 189 IGSLKKKALNASNKLTHSLKKRGKRKVENRPSF 221
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 242 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 337
G++ + L+KCGV++P I+D+ T
Sbjct: 83 GRVHPTIENILDKCGVVAPNLPTKIDDLSHST 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,348,071
Number of Sequences: 37544
Number of extensions: 205020
Number of successful extensions: 412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -