Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_P15
(511 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 168 2e-42
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 168 2e-42
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 168 2e-42
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 167 5e-42
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 164 4e-41
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 106 7e-24
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 104 3e-23
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / hi... 29 2.4
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi... 27 7.3
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 168 bits (409), Expect = 2e-42
Identities = 77/98 (78%), Positives = 86/98 (87%), Gaps = 1/98 (1%)
Frame = +2
Query: 164 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-N 340
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 33 VIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTAR 92
Query: 341 LLPSRQFGYLVLTTSGGIMDHEEARXKHLGGKILGFFF 454
LLPSRQFGY+VLTTS GIMDHEEAR K++GGK+LGFF+
Sbjct: 93 LLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/29 (79%), Positives = 29/29 (100%)
Frame = +1
Query: 67 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 153
MVR++VL+DALKS++NAEKRGKRQV+IRP
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRP 29
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 168 bits (409), Expect = 2e-42
Identities = 77/98 (78%), Positives = 86/98 (87%), Gaps = 1/98 (1%)
Frame = +2
Query: 164 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-N 340
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 33 VIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTAR 92
Query: 341 LLPSRQFGYLVLTTSGGIMDHEEARXKHLGGKILGFFF 454
LLPSRQFGY+VLTTS GIMDHEEAR K++GGK+LGFF+
Sbjct: 93 LLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/29 (79%), Positives = 29/29 (100%)
Frame = +1
Query: 67 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 153
MVR++VL+DALKS++NAEKRGKRQV+IRP
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRP 29
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 168 bits (409), Expect = 2e-42
Identities = 77/98 (78%), Positives = 86/98 (87%), Gaps = 1/98 (1%)
Frame = +2
Query: 164 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-N 340
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 33 VIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTAR 92
Query: 341 LLPSRQFGYLVLTTSGGIMDHEEARXKHLGGKILGFFF 454
LLPSRQFGY+VLTTS GIMDHEEAR K++GGK+LGFF+
Sbjct: 93 LLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/29 (79%), Positives = 29/29 (100%)
Frame = +1
Query: 67 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 153
MVR++VL+DALKS++NAEKRGKRQV+IRP
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRP 29
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 167 bits (405), Expect = 5e-42
Identities = 76/98 (77%), Positives = 86/98 (87%), Gaps = 1/98 (1%)
Frame = +2
Query: 164 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-N 340
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 33 VIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTAR 92
Query: 341 LLPSRQFGYLVLTTSGGIMDHEEARXKHLGGKILGFFF 454
LLPSRQFG++VLTTS GIMDHEEAR K++GGK+LGFF+
Sbjct: 93 LLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 50.4 bits (115), Expect = 7e-07
Identities = 22/29 (75%), Positives = 28/29 (96%)
Frame = +1
Query: 67 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 153
MVR++VL+D LKS++NAEKRGKRQV+IRP
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRP 29
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 164 bits (398), Expect = 4e-41
Identities = 74/98 (75%), Positives = 85/98 (86%), Gaps = 1/98 (1%)
Frame = +2
Query: 164 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-N 340
VI+KFLTVM KHGYI EFE VDDHR+GKIVV L GRLN CGVISPR+D+ + +IE WT
Sbjct: 39 VIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCGVISPRYDLGVKEIEGWTAK 98
Query: 341 LLPSRQFGYLVLTTSGGIMDHEEARXKHLGGKILGFFF 454
LLPSRQFGY+VLTTS GIMDHEEAR K++GGK+LGFF+
Sbjct: 99 LLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136
Score = 46.8 bits (106), Expect = 8e-06
Identities = 21/29 (72%), Positives = 26/29 (89%)
Frame = +1
Query: 67 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 153
MVR +VL+D LKS+ NAEK+GKRQV+IRP
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRP 35
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 106 bits (255), Expect = 7e-24
Identities = 47/98 (47%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Frame = +2
Query: 164 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-N 340
V+ FL +M + GYI F++ D HR G+I V+L GR+N C ++ R DV +IE++T
Sbjct: 32 VMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDVRAKEIEKYTER 91
Query: 341 LLPSRQFGYLVLTTSGGIMDHEEARXKHLGGKILGFFF 454
LP+RQ+GY+V+TT GI+DHEEA +++GG++LGFF+
Sbjct: 92 TLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +1
Query: 82 VLSDALKSIHNAEKRGKRQVLIRP 153
+L+DAL++I NAE+RGK V ++P
Sbjct: 5 ILNDALRTIVNAERRGKASVELKP 28
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 104 bits (250), Expect = 3e-23
Identities = 47/97 (48%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Frame = +2
Query: 164 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT-N 340
V+ FL +M + GYI F++ D HR G+I V+L GR+N C ++ R DV N+I ++T
Sbjct: 32 VMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALTYRQDVKANEIGQYTER 91
Query: 341 LLPSRQFGYLVLTTSGGIMDHEEARXKHLGGKILGFF 451
LP+RQ+GY+V+TT GI+DHEEA +++GG++LGFF
Sbjct: 92 TLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFF 128
Score = 33.5 bits (73), Expect = 0.084
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +1
Query: 82 VLSDALKSIHNAEKRGKRQVLIRP 153
+L+DAL++I NAEKRGK V ++P
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKP 28
>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative /
histidine--tRNA ligase, putative similar to SP|P12081
Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA
ligase) (HisRS) {Homo sapiens}; contains Pfam profiles
PF00587: tRNA synthetase class II core domain (G, H, P,
S and T), PF03129: Anticodon binding domain
Length = 479
Score = 28.7 bits (61), Expect = 2.4
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 167 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 331
IVK LT ++ IG++E+ +HR K+ L G L CGV +F + I++
Sbjct: 175 IVKILTELLDELEIGDYEVKLNHR--KL---LDGMLEICGVPPEKFRTICSSIDK 224
>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587, post-transcriptional control of
chloroplast gene expression CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 991
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 10 LLDXFCQFGSLRSAS*ILAMVRMNVLSDALKSIHNAEKRG 129
+LD C+ G A+ I + VR+ +LSDA+ EK G
Sbjct: 576 MLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTG 615
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,334,208
Number of Sequences: 28952
Number of extensions: 169146
Number of successful extensions: 333
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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