Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P11
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O31542 Cluster: YfnD protein; n=2; Bacillus subtilis|Re...    35   2.0  
UniRef50_UPI0001597342 Cluster: YfnD; n=1; Bacillus amyloliquefa...    34   3.4  

>UniRef50_O31542 Cluster: YfnD protein; n=2; Bacillus subtilis|Rep:
           YfnD protein - Bacillus subtilis
          Length = 311

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 580 WPRK*YTNXRILRSF*KNIFLWNFPSYYXSNRSSFCYTQRTQSDFYHFS 434
           WP + +    +++S   N  LWN  +Y    +    Y   T   FYHFS
Sbjct: 196 WPEQ-FKGVHVVKSIGANTALWNIENYKVGQKDGRVYIDETPLIFYHFS 243


>UniRef50_UPI0001597342 Cluster: YfnD; n=1; Bacillus
           amyloliquefaciens FZB42|Rep: YfnD - Bacillus
           amyloliquefaciens FZB42
          Length = 312

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -2

Query: 580 WPRK*YTNXRILRSF*KNIFLWNFPSYYXSNRSSFCYTQRTQSDFYHFS 434
           WP + + +  +  S   N  LWN   Y  S R    Y   T   FYHFS
Sbjct: 196 WPAQ-FEDVHVTESIGANAALWNIEQYDVSLRGGAVYVNDTPLIFYHFS 243


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,603,714
Number of Sequences: 1657284
Number of extensions: 9714525
Number of successful extensions: 19702
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19696
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)