Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P11
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.2  
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha...    25   7.2  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   7.2  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    25   9.5  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 236 SKFQRASEGIIIYFSNTTFTVLSE 307
           +KFQ +   II+Y+SN T   LSE
Sbjct: 717 NKFQNSESRIIVYYSNNTL-YLSE 739


>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 546 KIRXFVYYFRGHGKLQLQLVEM*IVIAVDQLVARMI 653
           KI   V    G  KLQ+Q+ E   + +VDQLV R I
Sbjct: 93  KIEELVDLQFGGCKLQVQVPESGDITSVDQLVGRRI 128


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 117 PLKYYTEAFERDKVYTLDFCFYS*YLVL 200
           PL+YYT   +  + +  DFC++   L+L
Sbjct: 149 PLRYYTYQRKGYEYFIADFCYWGNILLL 176


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 390 GAGEARPSLVII*NXRTLPHSGTRDFAPSDNTVNVVLLK 274
           G GEA P+  I+     L H G +D+A   N     +++
Sbjct: 289 GRGEANPTAAILSACLMLRHLGLKDYADLINAATYSVIE 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,297
Number of Sequences: 5004
Number of extensions: 45288
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)