Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P11
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44940.1 68418.m05512 F-box family protein contains F-box dom...    28   4.7  
At5g39680.1 68418.m04805 pentatricopeptide (PPR) repeat-containi...    28   6.2  
At5g35170.1 68418.m04168 adenylate kinase family protein contain...    28   6.2  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        28   6.2  

>At5g44940.1 68418.m05512 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 377

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 50  TFSYTHHSLGKRNNKTRKKICSSTKI 127
           T S+T+HS  K++ ++ KK+ +STK+
Sbjct: 343 TLSFTYHSKKKQDPESYKKLLTSTKL 368


>At5g39680.1 68418.m04805 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 710

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 588 VFRGHENSIQXFESYDHFKKIFFSGISR 505
           + +G++NS   FE    FK +FFSG SR
Sbjct: 106 MMKGYQNSGFDFEVLKLFKSMFFSGESR 133


>At5g35170.1 68418.m04168 adenylate kinase family protein contains
           Pfam profile: PF00406 adenylate kinase
          Length = 588

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 210 NIKIRLSINCRNKNPECKLYRVRTL 136
           N ++R+ IN    NPE  +YR+ TL
Sbjct: 339 NTRLRVDINIPELNPEMDVYRIGTL 363


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 192 SINCRNKNPECKLYRVRTLQCNILVEEHIF 103
           SI+  NKN E K+ + + +Q NI+++  +F
Sbjct: 68  SISLGNKNKEIKMLKRKAIQENIIIKRPVF 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,036,759
Number of Sequences: 28952
Number of extensions: 215045
Number of successful extensions: 463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)