Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_P10
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 157 2e-39
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.3
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 4.1
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 26 4.1
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 25 7.1
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 7.1
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 9.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.4
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.4
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 25 9.4
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 157 bits (380), Expect = 2e-39
Identities = 77/140 (55%), Positives = 105/140 (75%), Gaps = 2/140 (1%)
Frame = +2
Query: 47 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 220
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 221 MPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 400
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 401 YNAILEDLVFPAEIVGKRIR 460
+NAILED+VFP EI+GKR R
Sbjct: 124 HNAILEDIVFPTEIIGKRTR 143
Score = 54.4 bits (125), Expect = 1e-08
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = +3
Query: 471 DGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 596
DG + IKV LD T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 147 DGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1
Query: 339 LGLGRILRSPTKTTCLPLNFFSSSRTS 259
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 367 KEATLKDIDLCVQCYPRGLGLPC 435
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 32 STMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELH 190
ST++ K++ AS E F + Q + + + KA+ L KE+ LH
Sbjct: 124 STLTAKLLVASFGETIPFSLPLGQLSINVPPSLYHKAEFSPLDELSPKEVILH 176
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 499 KCTLMSCEPSNLNPDALA 446
KCTL++ E ++N DALA
Sbjct: 66 KCTLLTTEIEHINTDALA 83
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 329 PKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKR 454
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 385 P*AWPLLFVSNTSFVAGLRQDLTVSN 308
P A +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 490 LMSCEPSNLNPDALAYDLSREDQVLEDSIV 401
L S EP +NP + RE ++ED IV
Sbjct: 13 LYSYEPQEINPGEEIPENEREISIVEDEIV 42
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 589 SKVTSRPVSXLYTDWKVSTLCSIVVCWFLSKCTLMSCE 476
SK +S + W+ S L +++ W S CT SCE
Sbjct: 343 SKEQQNKISGFSSIWR-SCLEPLIILWPRSLCTEESCE 379
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/51 (21%), Positives = 23/51 (45%)
Frame = -3
Query: 595 GNSKVTSRPVSXLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLNPDALAY 443
G + ++P+S + + L ++V W + +SC NP ++ Y
Sbjct: 273 GQKAIAAKPISAM-KGYFAGGLAWLIVPWAMGSAAALSCLALTNNPVSVTY 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,245
Number of Sequences: 5004
Number of extensions: 50396
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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