Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P10
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)              156   2e-38
SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)                       29   4.3  
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             29   4.3  
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)                   29   4.3  
SB_17463| Best HMM Match : Protamine_P2 (HMM E-Value=5.6)              28   5.7  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                28   5.7  
SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09)                   28   7.5  
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  28   7.5  
SB_24560| Best HMM Match : Ank (HMM E-Value=0)                         28   7.5  
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                28   7.5  
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)                         28   7.5  
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           27   9.9  
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score =  156 bits (378), Expect = 2e-38
 Identities = 76/116 (65%), Positives = 94/116 (81%)
 Frame = +2

Query: 35  TMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY 214
           T S KI+K  G  A+ FE  ISQA++ELE NSD+KAQLRELYI+ AKEI++  KK+III+
Sbjct: 6   TASAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIF 65

Query: 215 VPMPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 382
           VP+P+++AF KIQ RLVRELEKKFSGKHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 66  VPVPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 24/34 (70%), Positives = 30/34 (88%)
 Frame = +3

Query: 495 HLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 596
           HLDK QQTTI+HK++TF +VY KLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154


>SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 550 DWKVSTLCSIVVCWFLSKCTLMSCEPSNLNPDALAYDLSREDQVL 416
           DWK+S    +++    S+  L +C  ++ +P A A DLS   Q+L
Sbjct: 409 DWKISHDALLILTNHTSESWLFACNGASGHPCATAVDLSHFAQLL 453


>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
          Length = 513

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 334 LRQDLTVSNKDYMFTTELLFELTDKPDLDLXKGLQFRHRHIDDDRLL 194
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216


>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 580 TSRPVSXLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLNPDALAYDLSRE 428
           T+R  +  ++DW ++  C    CW +S  T+ S   +N+     AY  SRE
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFSQVLTNIKVPIPAY--SRE 168


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
 Frame = +2

Query: 125 NSDLKAQLRELYITKAKEIE---LHNKKSIIIYVPMPKLKAFXKIQIRLVRELEKKFS-- 289
           + + K  L+E+ I ++K+ E   + + KS       PKLKA      +   +  KK    
Sbjct: 261 HEEKKEDLKEVVIKQSKQDEATAIKDSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKP 320

Query: 290 ---GKHVVFVGDRKILPKPSHKTRVANKQKRPRS 382
               K V+       LP+ +H+   AN Q+RP++
Sbjct: 321 VKRAKKVLNKKKMDTLPRGAHRPASANAQRRPQN 354


>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
          Length = 237

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 364 FVSNTSFVAGLRQDLTVSNKDYMFTTE 284
           F+ N SFV+ +  DLT S+ D+ + TE
Sbjct: 40  FIPNLSFVSAVLWDLTKSSSDFQWHTE 66


>SB_17463| Best HMM Match : Protamine_P2 (HMM E-Value=5.6)
          Length = 148

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -3

Query: 163 NVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHR*QLYGRERDR 5
           +V++PK   EV       QR R+RGLE +     RF DL+ H+ +   R+R+R
Sbjct: 44  HVRIPKGSSEVQSDAAPKQRGRERGLERVE-EKERF-DLQGHKQRERQRQRER 94


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 129  PTSKPNFGSFTLQKLKKLNYTIRS 200
            P S  N+G FT+++LK  +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438


>SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09)
          Length = 227

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 529 CSIVVCWFLSKCTLMSCEPSNLNPDALAYDLSREDQVLEDSIVHRGQ 389
           C  V+ W    CTL S  P+ L   A   D+SR   +L D  +  G+
Sbjct: 149 CRTVLAWLDQHCTLPSLRPAVL---AALRDISRTTSILTDPSLVPGE 192


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 77  DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLK 235
           + ++T ++     L  +  L+  +RELY    +E E   KKS++ ++ + PK+K
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVK 224


>SB_24560| Best HMM Match : Ank (HMM E-Value=0)
          Length = 248

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 404 NAILEDLVFPAEIVGKRIRVQVGRLTAH*GALRQKPTDYY*T*SGHLPVCI 556
           +A+ EDL  P  +  K+  ++VGRL    GA   K  D   T   H+  CI
Sbjct: 45  DAMKEDLSTPLHVACKKGSMEVGRLLVEKGAALDKKNDKGET-PLHMAACI 94


>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 493

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 334 LRQDLTVSNKDYMFTTELLFELTDKPDLDLXKGLQFRHRHIDDDRLL 194
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 40  LRQRLNSSNPGISNPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 86


>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
          Length = 675

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/107 (20%), Positives = 49/107 (45%)
 Frame = +2

Query: 5   SISFPPVKLSTMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIE 184
           S ++  V ++T +   +KAS     + ET  S    E E ++      RE+  +  ++  
Sbjct: 19  STAYTEVFVTTHAKTYLKASQFRKLTRETGASVLRNERERSAKRAQAFREISPSSPQDRR 78

Query: 185 LHNKKSIIIYVPMPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKI 325
            H+++   +      L+   K + +++RE+ KK +      +G+ +I
Sbjct: 79  KHSERRPFLATECDNLQEAEKWRHQIIREVAKKVAQIQNAGLGEFRI 125


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = +3

Query: 108 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 206
           WS+ KPTP  KPN        FG   T Q L+K N+ +  RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166


>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/101 (19%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
 Frame = +2

Query: 68  AEADSFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 232
           A+  +   +  Q   E++T+ + K  +RE  ITK K +     E   +++++    + K+
Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296

Query: 233 KAFXKIQIRLVRELEKKF---SGKHVVFVGDRKILPKPSHK 346
               + + + +RE+E++F     K+   + +R++  +   K
Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKYNAILEERRLAAEAEKK 337


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 334 LRQDLTVSNKDYMFTTELLFELTDKPDLDLXKGLQFRHRHIDDDRLL 194
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 40  LRQRLNSSNPSKSNPINILDALCQKHDIAYSKSKDLDDKHLADDNLL 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,933,344
Number of Sequences: 59808
Number of extensions: 382253
Number of successful extensions: 1069
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)