Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P10
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   169   2e-42
AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear recep...    29   2.1  
AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormo...    29   2.1  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical...    28   6.6  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical...    27   8.7  
AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical...    27   8.7  
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  169 bits (410), Expect = 2e-42
 Identities = 79/142 (55%), Positives = 110/142 (77%), Gaps = 1/142 (0%)
 Frame = +2

Query: 47  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 226
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 227 KLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 403
           +LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+
Sbjct: 67  QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126

Query: 404 NAILEDLVFPAEIVGKRIRVQV 469
           +A L++LV+PAE+VG+RIRV++
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKL 148



 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 29/46 (63%), Positives = 37/46 (80%)
 Frame = +3

Query: 465 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFPEP 602
           KLDG ++ KVHLDK+ QT + HK+  F SVY KLTG++VTFEFP+P
Sbjct: 147 KLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192


>AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-110 protein.
          Length = 412

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 511 WFLSKCTLMSCEPSNLNPDALAYDLSREDQVLEDS 407
           WF   C L  C    ++P+ + YD  + + +L+ S
Sbjct: 72  WFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSS 106


>AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform b protein.
          Length = 424

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 511 WFLSKCTLMSCEPSNLNPDALAYDLSREDQVLEDS 407
           WF   C L  C    ++P+ + YD  + + +L+ S
Sbjct: 84  WFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSS 118


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 221
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical
           protein R07B7.13 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = -3

Query: 496 CTLMSCEPSNLNPDALAYDLSREDQVLEDSIVHRGQCP*AWPLLFVSNTSFVAGLRQDLT 317
           C    CE   +NP A+  ++S   ++L+D ++ + +      L   S  + V+ L  DL 
Sbjct: 100 CRFSKCEEVGMNPRAIRAEISSGGKILKDELIAKREPRSKIMLSPKSKENEVSRLISDLN 159

Query: 316 -VSNK-DYMFTTEL 281
            + N+ D +F + L
Sbjct: 160 LIENQIDELFNSSL 173


>U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical
           protein T19D12.7 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 334 LRQDLTVSNKDYMFTTELLFELTDKPDLDLXKGLQFRHRHIDD 206
           L+QD     K +MF    +F   DK  +D  + L+F+  + DD
Sbjct: 167 LQQDFRSFQKVWMFNKTEMFSADDKTFIDSNRSLEFQVLNEDD 209


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +2

Query: 23  VKLSTMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 202
           +K +  + K I+A   +     T  S+ L ELE       Q +E +  K++E+E+ NK+ 
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301

Query: 203 I 205
           +
Sbjct: 302 V 302


>AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical
           protein F16B4.11 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 511 WFLSKCTLMSCEPSNLNPDALAYDL-SREDQVLEDSIVHR 395
           WF  KC L  C  + +N   + YD  + +  +L  + V+R
Sbjct: 83  WFCKKCRLAKCSEAGMNSRNIQYDRDANKTSLLSSTNVNR 122


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 133 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 47
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


>AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10b protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +2

Query: 176 EIELHNKKSIIIYVPMPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKT 349
           E E H K   ++   +  +K   +   +L+ E+E++F  + +        LP PS  T
Sbjct: 255 EAECHEKAVDLLKSAVGSVKLVIRYMPKLLDEMERRFERQRIRSTQQSPTLPTPSSST 312


>AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10a protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +2

Query: 176 EIELHNKKSIIIYVPMPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKT 349
           E E H K   ++   +  +K   +   +L+ E+E++F  + +        LP PS  T
Sbjct: 256 EAECHEKAVDLLKSAVGSVKLVIRYMPKLLDEMERRFERQRIRSTQQSPTLPTPSSST 313


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +2

Query: 344 KTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKRIRVQVGRLTAH*GALRQ 505
           K ++  K K  RSR+L++V  A  ++L FP E   KR  V   R  A  G  R+
Sbjct: 599 KPQLGKKMKVGRSRSLSAVRPAPRDELAFPDE--EKRAHVDKLRTKAMRGLRRE 650


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,038
Number of Sequences: 27780
Number of extensions: 287286
Number of successful extensions: 777
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)