Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_P10
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 141 4e-34
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 141 4e-34
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 136 9e-33
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 130 8e-31
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 130 8e-31
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 29 3.5
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 29 3.5
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 141 bits (341), Expect = 4e-34
Identities = 73/143 (51%), Positives = 103/143 (72%), Gaps = 2/143 (1%)
Frame = +2
Query: 47 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 220
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 221 MPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 400
KAF KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 401 YNAILEDLVFPAEIVGKRIRVQV 469
+ A+LED+ +PAEIVGKR R ++
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRL 145
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/45 (44%), Positives = 33/45 (73%)
Frame = +3
Query: 462 FKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 596
++LDG++++KV LD + E+K++T VY KLTG++V FE+P
Sbjct: 143 YRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 141 bits (341), Expect = 4e-34
Identities = 73/143 (51%), Positives = 103/143 (72%), Gaps = 2/143 (1%)
Frame = +2
Query: 47 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 220
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 221 MPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 400
KAF KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 401 YNAILEDLVFPAEIVGKRIRVQV 469
+ A+LED+ +PAEIVGKR R ++
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRL 145
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/45 (44%), Positives = 33/45 (73%)
Frame = +3
Query: 462 FKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 596
++LDG++++KV LD + E+K++T VY KLTG++V FE+P
Sbjct: 143 YRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 136 bits (330), Expect = 9e-33
Identities = 74/143 (51%), Positives = 100/143 (69%), Gaps = 2/143 (1%)
Frame = +2
Query: 47 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 220
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 221 MPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 400
KAF KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSV 122
Query: 401 YNAILEDLVFPAEIVGKRIRVQV 469
+ A+LED+ FPAEIVGKR R ++
Sbjct: 123 HEAMLEDVAFPAEIVGKRTRYRL 145
Score = 54.4 bits (125), Expect = 6e-08
Identities = 21/45 (46%), Positives = 34/45 (75%)
Frame = +3
Query: 462 FKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 596
++LDGS+++KV LD ++ E+K++T VY KLTG++V FE+P
Sbjct: 143 YRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 130 bits (314), Expect = 8e-31
Identities = 68/143 (47%), Positives = 99/143 (69%), Gaps = 2/143 (1%)
Frame = +2
Query: 47 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 220
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 221 MPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 400
KA+ KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 401 YNAILEDLVFPAEIVGKRIRVQV 469
+ AIL+D+V PAEIVGKR R ++
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRL 145
Score = 57.2 bits (132), Expect = 9e-09
Identities = 22/45 (48%), Positives = 35/45 (77%)
Frame = +3
Query: 462 FKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 596
++LDG++++KV LD ++ E+KV+ F +VY KLTG++V FEFP
Sbjct: 143 YRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 130 bits (314), Expect = 8e-31
Identities = 68/143 (47%), Positives = 99/143 (69%), Gaps = 2/143 (1%)
Frame = +2
Query: 47 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 220
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 221 MPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 400
KA+ KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 401 YNAILEDLVFPAEIVGKRIRVQV 469
+ AIL+D+V PAEIVGKR R ++
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRL 145
Score = 57.2 bits (132), Expect = 9e-09
Identities = 22/45 (48%), Positives = 35/45 (77%)
Frame = +3
Query: 462 FKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 596
++LDG++++KV LD ++ E+KV+ F +VY KLTG++V FEFP
Sbjct: 143 YRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 361 QTKEATLKDIDLCVQCYPRGLG 426
Q +E++LK CV+CYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 361 QTKEATLKDIDLCVQCYPRGLG 426
Q +E++LK CV+CYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,388,196
Number of Sequences: 28952
Number of extensions: 271376
Number of successful extensions: 749
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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