Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P09
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    27   1.3  
SPAC5H10.09c |||3-methyl-2-oxobutanoatehydroxymethyltransferase|...    25   2.9  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   6.8  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    24   9.0  

>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 30  NKLPFCDDQEF*FAGQQHIRC--*CFSTRRD-GGCGGRNISLYLRG 158
           N  PFC D  +    QQH +C   C  +R+D  GC    + L L+G
Sbjct: 148 NSWPFCLDHSYILEDQQHNKCLVHCNQSRKDLLGCS--QLFLLLKG 191


>SPAC5H10.09c
           |||3-methyl-2-
           oxobutanoatehydroxymethyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = -2

Query: 209 FADSRLELRAVGEPSFLATQV-KRNVPTATTAIAPSAKAL---AADVLLPCELEFLVIAK 42
           FA+  + +  VG+   +  Q     +P +   IA   K++   A + LL  +L F+  + 
Sbjct: 35  FAEQGMPVMLVGDSLGMTAQGHSTTLPVSVEDIAYHTKSVRRGAPNRLLMADLPFMSYST 94

Query: 41  WQFICGNGKT 12
           W+  C N  T
Sbjct: 95  WEDACKNAAT 104


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 279 KRVHVSIILRTKLF--FRCTMFXYYXRRF 199
           K   V++IL +++F    CTMF Y+ R F
Sbjct: 142 KAKSVALILVSRIFTGVACTMFLYHKRYF 170


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 280  QACTRKYYFANKIIFPLHYVLXLXSPIRALSSVR-WGNLPFLPRK 149
            +A    YYFA+  + P+H ++ L   I A   ++ + +  FL  K
Sbjct: 1070 RALELSYYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNK 1114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,231,478
Number of Sequences: 5004
Number of extensions: 20398
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)