Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P09
         (375 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11638| Best HMM Match : Kinesin (HMM E-Value=5.5e-10)               30   0.70 
SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         27   5.0  
SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)                     27   6.5  
SB_45912| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    26   8.7  

>SB_11638| Best HMM Match : Kinesin (HMM E-Value=5.5e-10)
          Length = 208

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 117 GGCGGRNISLYLRGKKGRFPHRTELK 194
           G C G  +S+ L+GK+   PH TE++
Sbjct: 51  GSCAGTQLSIQLKGKQVVVPHLTEIQ 76


>SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 117 GGCGGRNISLYLRGKKGRFPHRTELK 194
           G  GG  +S+ L+GK+   PH TE++
Sbjct: 624 GSGGGTQLSIQLKGKQVVVPHLTEIQ 649


>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 83   VLLPCELEFLVIAKWQFICGNGKTD 9
            V +P    FL I  W F+C   KTD
Sbjct: 1408 VTVPVSANFLSIIGWHFLCVQWKTD 1432


>SB_1141| Best HMM Match : PA (HMM E-Value=3.3e-11)
          Length = 324

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 227 LCSXTXFADSRLELRAVGEPSFLATQVKRNVPTAT 123
           L S    A ++L  R V +PS   +QV RN+  AT
Sbjct: 248 LSSAAKKAIAKLPTRTVKKPSSTESQVSRNIEVAT 282


>SB_45912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 197 RLELRAVGEPSFLATQVKRNVPTATTAIAPSAKALAADV 81
           R E R +  PS L   VK+N+ +  T  +PS K +  D+
Sbjct: 146 RKEHRNLQSPSQLDNVVKKNLDSTGTYTSPSKKPVTIDL 184


>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 197  RLELRAVGEPSFLATQVKRNVPTATTAIAPSAKALAADV 81
            R E R +  PS L   VK+N+ +  T  +PS K +  D+
Sbjct: 1045 RKEHRNLQSPSQLDNVVKKNLDSTGTYTSPSKKPVTIDL 1083


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,824,253
Number of Sequences: 59808
Number of extensions: 167492
Number of successful extensions: 306
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)