Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P09
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16530-1|AAA28161.1|  163|Caenorhabditis elegans ubiquitin-like:...    28   2.5  
AC006651-4|AAF39865.1|  163|Caenorhabditis elegans Ubiquitin-lik...    28   2.5  
AF003146-2|AAB54201.1|  228|Caenorhabditis elegans Hypothetical ...    26   7.6  

>L16530-1|AAA28161.1|  163|Caenorhabditis elegans
           ubiquitin-like:ribosomal proteinfusion protein protein.
          Length = 163

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 183 CGGGTFLSCHASKEKCSDRHN 121
           CGGG F++ HA++  C   H+
Sbjct: 120 CGGGVFMAQHANRHYCGRCHD 140


>AC006651-4|AAF39865.1|  163|Caenorhabditis elegans Ubiquitin-like
           family protein 1,isoform a protein.
          Length = 163

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 183 CGGGTFLSCHASKEKCSDRHN 121
           CGGG F++ HA++  C   H+
Sbjct: 120 CGGGVFMAQHANRHYCGRCHD 140


>AF003146-2|AAB54201.1|  228|Caenorhabditis elegans Hypothetical
           protein F56F4.4 protein.
          Length = 228

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 7   LSVFPLPQINCHFAMTKNS 63
           +S FPL ++NC F++T N+
Sbjct: 113 ISTFPLLKLNCSFSVTVNN 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,209,466
Number of Sequences: 27780
Number of extensions: 127685
Number of successful extensions: 272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)