Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P09
         (375 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)...    29   0.76 
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ...    29   1.0  
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ...    29   1.3  
At1g31840.1 68414.m03912 pentatricopeptide (PPR) repeat-containi...    28   2.3  
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    26   9.4  

>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
           identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
          Length = 626

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 102 STRRDGGCGGRNISLYLRGKKGRFPHRT 185
           +TRR GG GGRN     R +KG  P +T
Sbjct: 571 NTRRSGGGGGRNNKNKKRSRKGSDPLKT 598


>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
           ribosomal protein S27A (RPS27aC) identical to GI:166933,
           GI:166934
          Length = 157

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 285 KHKRVHVSIILRTKLFFRCTMFXYYXRRFAP*APCGGGTFLSCHASKEKC 136
           KHK+V ++++   K+     +     R+  P A CG GTF++ H  +  C
Sbjct: 94  KHKKVKLAVLQFYKIDGSGKV--QRLRKECPNATCGAGTFMASHFDRHYC 141


>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
           ribosomal protein S27A (RPS27aB) identical to GI:166936
          Length = 157

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 285 KHKRVHVSIILRTKLFFRCTMFXYYXRRFAP*APCGGGTFLSCHASKEKC 136
           KHK+V ++++   K+     +     R+  P A CG GTF++ H  +  C
Sbjct: 94  KHKKVKLAVLQFYKVDGSGKV--QRLRKECPNATCGAGTFMASHFDRHYC 141


>At1g31840.1 68414.m03912 pentatricopeptide (PPR) repeat-containing
           protein contains multiple PPR domains: Pfam profile:
           PF01535: PPR repeat
          Length = 690

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 209 FADSRLELRAVGEPSFLATQVKRNVPTATTAIAPSAKALAADV 81
           F+ S L+LR +  P   +  VK N   +    + SAKALAA +
Sbjct: 4   FSSSSLQLREIFFPRIFSVFVKLNFLNSRGFSSDSAKALAAGI 46


>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 145 REMFRPPQPPSRLVLKH*QRMCCC 74
           R + RPP PP  L +   + +CCC
Sbjct: 65  RVLPRPPPPPPPLPMFDAEVLCCC 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,656,640
Number of Sequences: 28952
Number of extensions: 115192
Number of successful extensions: 244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)