Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P08
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    31   0.13 
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   6.6  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   6.6  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.7  

>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 22/54 (40%), Positives = 27/54 (50%)
 Frame = -3

Query: 467 KKDVTSKKN*HSFDSVNELTL*YHLLTIPKMFLTLMSFTYISLTKSLSESDNLQ 306
           KK +T+KK      S NEL    H   IPK FL L   TY+ L K +    N+Q
Sbjct: 419 KKFLTAKKLFTDLPSNNELFSFIH--NIPKEFLHLSDSTYLDLEKQVLRIFNVQ 470


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 31  FKNANLLHLSKYKNTHVQTLFLSSLVRKFSVRSIFL 138
           +K    L LSK   TH+ + FLS L   F   SIFL
Sbjct: 75  YKGDKRLVLSKVLITHIISAFLSFLSAIFVFFSIFL 110


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 476 NVACYKLHWQLVSFLSSTI 532
           +VACY  HW++   ++ST+
Sbjct: 770 DVACYLNHWEVAGCVASTL 788


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 510 SVFFHPQYFLFG 545
           S++FHP YF+FG
Sbjct: 511 SLWFHPLYFMFG 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,562
Number of Sequences: 5004
Number of extensions: 36438
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)