Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P08
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 209 IDVNPRLNTLTRSKLHCKLFNSHNFRKTE 295
           +D+N  LN +TR+ L C  F  ++   +E
Sbjct: 548 LDLNSGLNKITRNSLDC-FFTMNDLEPSE 575


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 209 IDVNPRLNTLTRSKLHCKLFNSHNFRKTE 295
           +D+N  LN +TR+ L C  F  ++   +E
Sbjct: 548 LDLNSGLNKITRNSLDC-FFTMNDLEPSE 575


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 469 IKKMLLVKKINTHSTPSMSSLCNTTYLQYPKCS 371
           +K+  +   ++  ST ++++ CNT      KCS
Sbjct: 334 VKREKIKISVSYPSTETLNTKCNTLERTPSKCS 366


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 386 IPKMFLTLMSFTYISLTKSL 327
           +P+ FLT  SF Y++ T  +
Sbjct: 189 VPEGFLTSCSFDYLTDTNEI 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,955
Number of Sequences: 438
Number of extensions: 2397
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)