Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P08
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila...    28   5.7  
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot...    27   9.9  
At1g61750.1 68414.m06964 expressed protein contains Pfam profile...    27   9.9  
At1g17400.1 68414.m02124 hypothetical protein                          27   9.9  

>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
           to CAF protein [Arabidopsis thaliana] GI:6102610;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF03368:
           Domain of unknown function, PF00636: RNase3 domain,
           PF00035: Double-stranded RNA binding motif
          Length = 1676

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 140 ERNIDLTENFLTNEDRNNV 84
           E+ +DL ENF  NEDR N+
Sbjct: 628 EKEMDLIENFKVNEDRMNL 646


>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
           similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
           6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
           subtilis}; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 511

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 446 KN*HSFDSVNELTL*YHLLTIPKMFLTLMSFTYISLTKSLSESDN 312
           K+ H+F ++ E+T  YH L +    ++    + +S T S  ES +
Sbjct: 274 KSKHNFKTIREITASYHPLALRHFLMSAQYRSPLSFTASQLESSS 318


>At1g61750.1 68414.m06964 expressed protein contains Pfam profile:
           PF01657 domain of unknown function
          Length = 352

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 458 HLFYLVNVACYKLH--WQLVSFLSSTI 532
           H+F+L+N+  Y ++  W +  FL STI
Sbjct: 303 HIFFLINIKTYLIYITWIIYLFLLSTI 329


>At1g17400.1 68414.m02124 hypothetical protein
          Length = 310

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 469 IKKMLLVKKINTHSTPSMSSLCNTTYLQYPK 377
           ++KM+L KKIN  ++   +SL    YLQ  K
Sbjct: 227 MEKMMLHKKINAQASSKPTSLTTKRYLQDKK 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,404,968
Number of Sequences: 28952
Number of extensions: 169108
Number of successful extensions: 376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)