Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P06
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    26   3.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   5.4  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   9.4  

>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 347 LFRPVCKVKKTVQICGFIFFIKEAQVLL*NCLKFF 451
           + +  C   + + I GFIFF      ++ +CL FF
Sbjct: 173 VLKGACYAMRAMYILGFIFFALTIVSIVISCLPFF 207


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 201 TNPKPAIXI-CHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSP 52
           TNPK  +    HI+  + S+ + N     +   H  ++SSN    TATG P
Sbjct: 63  TNPKIEVRSETHIYEPNDSLFKENQDFPSNPTAHSPSSSSNDSVITATGVP 113


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +2

Query: 20  IXLNDWYKNSKGEPVAVLASPFDDVVNWCVXMLKWGIXFGLNILTEH 160
           I  N    N      A+L  P  +  +W      WG    L+IL+ H
Sbjct: 165 IVANQVLSNPDIYSTAILGKPSIEYASWIRKETSWGGYIELSILSSH 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,700
Number of Sequences: 5004
Number of extensions: 35540
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)