Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_P06
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334... 30 1.0
07_03_0260 + 15928932-15929255,15930174-15930347 29 1.8
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 29 2.4
05_02_0129 - 6897189-6897448,6897581-6898063,6898409-6898604 29 2.4
08_02_0891 + 22312537-22312720,22313446-22313525,22314484-223146... 28 4.1
12_02_0750 + 22764481-22764771,22764871-22765383,22765470-227656... 28 5.4
05_02_0131 - 6919143-6920125,6920334-6920529 28 5.4
05_02_0130 - 6906540-6907522,6908542-6908737 28 5.4
05_02_0128 - 6890918-6891900,6892929-6893124 28 5.4
03_02_0284 - 7092506-7092927,7093249-7093414,7093996-7094187,709... 28 5.4
01_06_0706 + 31352513-31352813,31352906-31353363 27 9.5
>01_01_0450 -
3344203-3344259,3344339-3344506,3344743-3344956,
3345039-3345101,3345582-3345769,3345846-3346029,
3346535-3346606,3346676-3346787,3346878-3346953,
3347050-3347100,3347179-3347260,3347331-3347567,
3347650-3347772,3348141-3348326,3348680-3349625,
3350426-3350551,3350683-3350811,3350918-3351049,
3351167-3351301,3351450-3351575,3352080-3352148,
3352149-3352205,3352302-3352436,3352600-3352704,
3352841-3352906,3353333-3353503,3353806-3353983
Length = 1395
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = -1
Query: 474 NIHTSLQTKNFKQFYNSTCASLIKKINPHICTVFFTLQTGRKSYQTHDFLNALRIISQKN 295
+++T ++F S K+ CT+FFTL T QT D + ++++ K
Sbjct: 763 SVNTDYLAGEKRRFGGRNSISPFKRPRSSRCTIFFTLLTYNSCDQTEDVTDEVKLMDAKK 822
Query: 294 RFXY 283
Y
Sbjct: 823 AEKY 826
>07_03_0260 + 15928932-15929255,15930174-15930347
Length = 165
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 20 IXLNDWYKNSKGEPVAVLASPFDDVVNWCVXMLKWGIXFG--LNILTEHPWIWQIXIAGF 193
+ L+ WY G+ +A F + W +L W + +L PW +A
Sbjct: 42 VGLHRWYATEFGDYLAAEPPGFFRGLVWLELLLHWPLSVATLYGVLARRPWAGATALAA- 100
Query: 194 GLVALTALIAII 229
G+ +TA+ A++
Sbjct: 101 GVSVVTAMSAVL 112
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPL 49
P P I C+ C + + PN ++ T +T+ SNG+ +A P+
Sbjct: 226 PDPVINTCNGLICGETFVGPNSPNKPALWTENWTSRSNGQNNSAFSYPI 274
>05_02_0129 - 6897189-6897448,6897581-6898063,6898409-6898604
Length = 312
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 264 FVSFSGFDLPALIIAIKAVKATNPKPAIXICHIHGCS 154
F ++SG + P+ + + ++ NP + I +HGCS
Sbjct: 99 FSTYSGCNAPSADLKLASLLGLNPSVSCTILSLHGCS 135
>08_02_0891 +
22312537-22312720,22313446-22313525,22314484-22314640,
22314661-22314716
Length = 158
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 204 ATNPKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSN 82
AT P P+ + H+ VSIL P + T F +SN
Sbjct: 9 ATAPSPSTVLAHLAAAKVSILLGLSDPELACVTSNFLPTSN 49
>12_02_0750 +
22764481-22764771,22764871-22765383,22765470-22765601,
22765731-22766108
Length = 437
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 401 FFIKEAQVLL*NCLKFFVCXDVC 469
FF+ AQVL C+KF C D C
Sbjct: 355 FFVLNAQVL--ECIKFVACRDKC 375
>05_02_0131 - 6919143-6920125,6920334-6920529
Length = 392
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 264 FVSFSGFDLPALIIAIKAVKATNPKPAIXICHIHGCS 154
F ++SG P+ + + ++ NP + I +HGCS
Sbjct: 135 FSTYSGCSAPSADLKLASLLGLNPSVSRTILSLHGCS 171
>05_02_0130 - 6906540-6907522,6908542-6908737
Length = 392
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 264 FVSFSGFDLPALIIAIKAVKATNPKPAIXICHIHGCS 154
F ++SG P+ + + ++ NP + I +HGCS
Sbjct: 135 FSTYSGCSAPSADLKLASLLGLNPSVSRTILSLHGCS 171
>05_02_0128 - 6890918-6891900,6892929-6893124
Length = 392
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 264 FVSFSGFDLPALIIAIKAVKATNPKPAIXICHIHGCS 154
F ++SG P+ + + ++ NP + I +HGCS
Sbjct: 135 FSTYSGCSAPSADLKLASLLGLNPSVSRTILSLHGCS 171
>03_02_0284 -
7092506-7092927,7093249-7093414,7093996-7094187,
7094289-7094510
Length = 333
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 174 CHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEAR 70
C + GC SIL N SI + +F T +N AR
Sbjct: 71 CFVQGCDASILLDNST---SIVSEKFATPNNNSAR 102
>01_06_0706 + 31352513-31352813,31352906-31353363
Length = 252
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 408 IKKINPHICTVFFTLQTGRKSYQTHDFLNAL 316
+K I H+CT R+ +TH F++ L
Sbjct: 50 VKHIKQHVCTFALYAHDPRRQVETHHFVSRL 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,785,609
Number of Sequences: 37544
Number of extensions: 182252
Number of successful extensions: 377
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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