Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P06
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16520| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8)             28   5.5  
SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)                       27   7.3  
SB_15488| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00019)          27   7.3  
SB_784| Best HMM Match : WAPL (HMM E-Value=2.4e-18)                    27   9.6  
SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)                    27   9.6  

>SB_16520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 473 IYIHXYKQKILNNFTIAPALL 411
           IYIH  + K+ NN T AP L+
Sbjct: 78  IYIHYRESKVFNNLTFAPVLI 98


>SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8)
          Length = 366

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -1

Query: 468 HTSLQTKNFKQFYNSTCASLIKKINPHICTVFFTLQTGRKSYQTHDFLNALRIISQKNR 292
           HT+ Q K     YN T  +  + I PH  T   T QT ++  Q +D  N     +Q+++
Sbjct: 39  HTTQQNKQPNDTYNPTTHTTPRHIQPH-DTYNPTSQTTKRHIQHNDAYNPTAHTTQQHK 96


>SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)
          Length = 404

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 144 LRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEFLYQS 31
           +RP  IPHF I     T S+  +  ++T S    +Y S
Sbjct: 47  IRPLSIPHFKILDPPLTDSAERKTSSSTSSLAGVMYAS 84


>SB_15488| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00019)
          Length = 589

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = -1

Query: 465 TSLQTKNFKQFYNSTCASLIKKINPHICTVFFTLQTGRKSYQTHDFLNALRIISQKNRFX 286
           TSL T     F N+   S+IK++   +     TLQ+   SY    ++ +L   S++ R  
Sbjct: 75  TSLATGEKVAFVNNALHSMIKQVKVELNNRPVTLQS--DSYAYRAYIESLLNYSKEGRES 132

Query: 285 YLRXLSFFVSFSG 247
           YL    ++   +G
Sbjct: 133 YLTGALWYKDTAG 145


>SB_784| Best HMM Match : WAPL (HMM E-Value=2.4e-18)
          Length = 539

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 118 EMGNXIRSQYTHRTPMDMANXNSWFWIGSFDSFNCNY*SRKIKATKGNKK 267
           E+ N + S+ T  + +D+   +SW  I     +      +K  A+KG KK
Sbjct: 25  EVKNDVESKTTTGSTLDVPKKSSWTRISKAVEYTKEQSPKKKSASKGGKK 74


>SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)
          Length = 950

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 187 WFWIGSFDSFNCNY*SRKIKATKGNKKR 270
           W+ +G  +S  C    R +   KGNK R
Sbjct: 561 WYTLGHLESQQCELALRMLSGAKGNKSR 588


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,329,927
Number of Sequences: 59808
Number of extensions: 241588
Number of successful extensions: 483
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)