Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P06
         (534 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X60992-1|CAA43306.1|  468|Homo sapiens T cell glycoprotein CD6 p...    29   7.8  
U66146-1|AAC51165.1|  592|Homo sapiens CD6e protein.                   29   7.8  
U66145-1|AAC51164.1|  601|Homo sapiens CD6d protein.                   29   7.8  
U66144-1|AAC51163.1|  595|Homo sapiens CD6c protein.                   29   7.8  
U66143-1|AAC51162.1|  635|Homo sapiens CD6b protein.                   29   7.8  
U66142-1|AAC51161.1|  668|Homo sapiens CD6a protein.                   29   7.8  
U34625-1|AAA86419.1|  595|Homo sapiens T cell surface glycoprote...    29   7.8  
U34624-1|AAA86418.1|  636|Homo sapiens T cell surface glycoprote...    29   7.8  
U34623-1|AAA86417.1|  668|Homo sapiens T cell surface glycoprote...    29   7.8  
L78838-5|AAL40087.1|  595|Homo sapiens T cell surface glycoprote...    29   7.8  
L78838-4|AAL40086.1|  601|Homo sapiens T cell surface glycoprote...    29   7.8  
L78838-3|AAL40088.1|  635|Homo sapiens T cell surface glycoprote...    29   7.8  
L78838-2|AAL40085.1|  592|Homo sapiens T cell surface glycoprote...    29   7.8  
L78838-1|AAL40089.1|  668|Homo sapiens T cell surface glycoprote...    29   7.8  
BC078669-1|AAH78669.1|  668|Homo sapiens CD6 molecule protein.         29   7.8  
BC033755-1|AAH33755.1|  639|Homo sapiens CD6 protein protein.          29   7.8  

>X60992-1|CAA43306.1|  468|Homo sapiens T cell glycoprotein CD6
           protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>U66146-1|AAC51165.1|  592|Homo sapiens CD6e protein.
          Length = 592

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>U66145-1|AAC51164.1|  601|Homo sapiens CD6d protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>U66144-1|AAC51163.1|  595|Homo sapiens CD6c protein.
          Length = 595

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>U66143-1|AAC51162.1|  635|Homo sapiens CD6b protein.
          Length = 635

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>U66142-1|AAC51161.1|  668|Homo sapiens CD6a protein.
          Length = 668

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>U34625-1|AAA86419.1|  595|Homo sapiens T cell surface glycoprotein
           CD6 protein.
          Length = 595

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>U34624-1|AAA86418.1|  636|Homo sapiens T cell surface glycoprotein
           CD6 protein.
          Length = 636

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>U34623-1|AAA86417.1|  668|Homo sapiens T cell surface glycoprotein
           CD6 protein.
          Length = 668

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>L78838-5|AAL40087.1|  595|Homo sapiens T cell surface glycoprotein
           CD6 isoform c protein.
          Length = 595

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>L78838-4|AAL40086.1|  601|Homo sapiens T cell surface glycoprotein
           CD6 isoform d protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>L78838-3|AAL40088.1|  635|Homo sapiens T cell surface glycoprotein
           CD6 isoform b protein.
          Length = 635

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>L78838-2|AAL40085.1|  592|Homo sapiens T cell surface glycoprotein
           CD6 isoform e protein.
          Length = 592

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>L78838-1|AAL40089.1|  668|Homo sapiens T cell surface glycoprotein
           CD6 isoform c protein.
          Length = 668

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>BC078669-1|AAH78669.1|  668|Homo sapiens CD6 molecule protein.
          Length = 668

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


>BC033755-1|AAH33755.1|  639|Homo sapiens CD6 protein protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 195 PKPAIXICHIHGCSVSILRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEF 43
           P  A  +C   GC  ++ RP  +PH S+    +  S NGE  T +     F
Sbjct: 296 PSEAKVLCQSLGCGTAVERPKGLPH-SLSGRMY-YSCNGEELTLSNCSWRF 344


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,353,273
Number of Sequences: 237096
Number of extensions: 1105001
Number of successful extensions: 1624
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1624
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)