Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P06
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   1.5  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   4.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   6.0  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 159 CSVSI-LRPNXIPHFSIXTHQFTTSSNGEARTATGSPLEFLYQSLS 25
           C++   L PN   ++ I  +   + S+  A  ATG PL ++   L+
Sbjct: 108 CNIQYALNPNTEEYYIIEVNARLSRSSALASKATGYPLAYVAAKLA 153


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 477 LNIHTSLQTKNFKQFYNSTCASLIKKIN 394
           L+  T     N+K  YN+ C  L   IN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNCKKLYYNIN 112


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 35  WYKNSKGEPVAVLASP 82
           WY  +  EP+ VL+ P
Sbjct: 271 WYAQTGSEPMLVLSGP 286


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 35  WYKNSKGEPVAVLASP 82
           WY  +  EP+ VL+ P
Sbjct: 271 WYAQTGSEPMLVLSGP 286


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 26  LNDWYKNSKGEPVAVLASP 82
           L +W    +GE +A+L  P
Sbjct: 71  LQNWMDKFRGEEIAILYDP 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,933
Number of Sequences: 438
Number of extensions: 2521
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)