Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P04
         (503 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    75   9e-13
UniRef50_Q1YKB3 Cluster: Putative uncharacterized protein; n=1; ...    34   1.6  
UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1; Gr...    34   2.1  
UniRef50_A6T4D8 Cluster: Alpha-hemolysin; n=5; Bacteria|Rep: Alp...    33   3.7  
UniRef50_Q4TGD5 Cluster: Chromosome undetermined SCAF3766, whole...    32   8.5  
UniRef50_Q4YGX6 Cluster: Putative uncharacterized protein; n=1; ...    32   8.5  
UniRef50_O44565 Cluster: Laminin related. see also lmb-protein 1...    32   8.5  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 74.9 bits (176), Expect = 9e-13
 Identities = 33/58 (56%), Positives = 40/58 (68%)
 Frame = +3

Query: 159 IYGTGGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGNLVAGSIVSQLTAAAMVAPTP 332
           IYGTGGLLTP+VAP+L                  YYGN+VAGS++SQLT+AAM+APTP
Sbjct: 17  IYGTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGNVVAGSVISQLTSAAMLAPTP 74


>UniRef50_Q1YKB3 Cluster: Putative uncharacterized protein; n=1;
           Aurantimonas sp. SI85-9A1|Rep: Putative uncharacterized
           protein - Aurantimonas sp. SI85-9A1
          Length = 215

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +2

Query: 113 GASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNS-GRKHSRCCTSILRKFSGR-Q 286
           G  S   G  GR+        +    +G R+  + SGN  G+   R C     +  GR Q
Sbjct: 45  GEQSLAPGNSGRQITGKQKRSNNGQEAGQRSEPRHSGNERGKAEQRWCVDESNRRGGRSQ 104

Query: 287 HCVTVDCCCHGSPH 328
            CV     CHGSP+
Sbjct: 105 LCVAAAMRCHGSPN 118


>UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1;
           Granulibacter bethesdensis CGDNIH1|Rep: Hypothetical
           cytosolic protein - Granulobacter bethesdensis (strain
           ATCC BAA-1260 / CGDNIH1)
          Length = 90

 Score = 33.9 bits (74), Expect = 2.1
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 95  QKLKEHGA--SSCISGKRGRRCCNIWHWGSVDSISGSRAR 208
           Q L+EHG    S ++G+R  RC N WH G  D +   R R
Sbjct: 42  QALREHGTFQGSMLAGRRILRC-NPWHQGGYDPVPAGRCR 80


>UniRef50_A6T4D8 Cluster: Alpha-hemolysin; n=5; Bacteria|Rep:
           Alpha-hemolysin - Janthinobacterium sp. (strain
           Marseille) (Minibacterium massiliensis)
          Length = 86

 Score = 33.1 bits (72), Expect = 3.7
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 44  FLNQHSSFYTCAIARREQKLKEHGA--SSCISGKRGRRCCNIWHWGSVDSI 190
           FL Q+  FY    +   + L+EHGA   S ++ KR  + C+ WH G VD +
Sbjct: 19  FLGQNCRFYPSCSSYAIEALEEHGALKGSFLATKRLCK-CHPWHAGGVDPV 68


>UniRef50_Q4TGD5 Cluster: Chromosome undetermined SCAF3766, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF3766,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 328

 Score = 31.9 bits (69), Expect = 8.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 204 AREPLMESTDPQCHILQHRRPRLPLMQLE 118
           A +PL   T+P+  +LQ+RRP+L L  L+
Sbjct: 5   AEQPLSLRTEPKLRVLQYRRPKLELQLLK 33


>UniRef50_Q4YGX6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 116

 Score = 31.9 bits (69), Expect = 8.5
 Identities = 24/75 (32%), Positives = 33/75 (44%)
 Frame = +2

Query: 107 EHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGRQ 286
           E G+ SC++G    RC      G    ISGS +    +      + RC TS LR  +G  
Sbjct: 12  ETGSHSCVTGNH--RC----ETGDHSCISGSHSCVTGNHICETGNHRCVTSNLRCETGSH 65

Query: 287 HCVTVDCCCHGSPHA 331
            CVT +  C    H+
Sbjct: 66  SCVTSNHRCETGDHS 80


>UniRef50_O44565 Cluster: Laminin related. see also lmb-protein 1;
            n=2; Caenorhabditis|Rep: Laminin related. see also
            lmb-protein 1 - Caenorhabditis elegans
          Length = 1067

 Score = 31.9 bits (69), Expect = 8.5
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 122  SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 226
            +C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,315,547
Number of Sequences: 1657284
Number of extensions: 7326906
Number of successful extensions: 15467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15454
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)