Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_P03
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5373| Best HMM Match : Lung_7-TM_R (HMM E-Value=6.6) 33 0.18
SB_52684| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_34801| Best HMM Match : Vicilin_N (HMM E-Value=0.3) 32 0.32
SB_5429| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36) 32 0.32
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08) 31 0.97
SB_44456| Best HMM Match : PQQ (HMM E-Value=0.73) 30 1.3
SB_14228| Best HMM Match : Zim (HMM E-Value=3.4) 29 2.9
SB_2045| Best HMM Match : EGF (HMM E-Value=0) 29 2.9
SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 29 3.9
SB_2740| Best HMM Match : DUF866 (HMM E-Value=1.1) 29 3.9
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12) 28 5.1
SB_7636| Best HMM Match : zf-CCHC (HMM E-Value=6.6) 28 5.1
SB_4914| Best HMM Match : RVT_1 (HMM E-Value=2.5e-16) 28 5.1
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 28 6.8
SB_19100| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05) 28 6.8
SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9) 27 9.0
SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2) 27 9.0
>SB_5373| Best HMM Match : Lung_7-TM_R (HMM E-Value=6.6)
Length = 303
Score = 33.1 bits (72), Expect = 0.18
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 102 DPAVQSYILYSGILGLKLLAVTILTGRVRYAKKVFANEEDAKRTKGKVKY-DDPDVERVR 278
D AV IL S ILGL L T T V ++KV N+E+ +K KV Y ++ V
Sbjct: 208 DRAVNVSILVSEILGLPLPESTTETKTVNTSEKVSNNKENFNSSK-KVSYNENQTVNTSE 266
Query: 279 RAHLNDLENIPV 314
+ N+ E + V
Sbjct: 267 KVSYNENETVTV 278
>SB_52684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = -2
Query: 378 TAELPRQPQVLL*DRVPQAPKTLECSRDRSSERVSLVQRRGHRTSP 241
T +L RQP + R+P A T E SR+ + ++SL+QRRGH P
Sbjct: 86 TRQLRRQPSPIR-IRIPAAQSTEETSRNLA--QLSLLQRRGHPPLP 128
>SB_34801| Best HMM Match : Vicilin_N (HMM E-Value=0.3)
Length = 451
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = -2
Query: 378 TAELPRQPQVLL*DRVPQAPKTLECSRDRSSERVSLVQRRGHRTSP 241
T +L RQP + R+P A T E SR+ + ++SL+QRRGH P
Sbjct: 332 TRQLRRQPSPIR-IRIPTAQSTEETSRNLA--QLSLLQRRGHPPLP 374
>SB_5429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = -2
Query: 378 TAELPRQPQVLL*DRVPQAPKTLECSRDRSSERVSLVQRRGHRTSP 241
T +L RQP + R+P A T E SR+ + ++SL+QRRGH P
Sbjct: 104 TRQLRRQPSPIR-VRIPTAQSTEETSRNLA--QLSLLQRRGHPPLP 146
>SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36)
Length = 592
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = -2
Query: 378 TAELPRQPQVLL*DRVPQAPKTLECSRDRSSERVSLVQRRGHRTSP 241
T +L RQP + R+P A T E SR+ + ++SL+QRRGH P
Sbjct: 436 TRQLRRQPSPIR-VRIPTAQSTEETSRNLA--QLSLLQRRGHPPLP 478
>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
Length = 718
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 327 GALYLTTAPEAAW-ATLLFRVYTAGRILHTIVYAVKPLPQPARGIAFGIPFIITVY-MGF 500
GA YL + + T + Y LH + + P P I + +PF++ Y + F
Sbjct: 503 GAFYLAPPEDGSRPGTFMVNTYKHEESLHPVPFMFITYPVPLMVITYPVPFMVITYPVPF 562
Query: 501 KVVTH 515
V+T+
Sbjct: 563 MVITY 567
>SB_44456| Best HMM Match : PQQ (HMM E-Value=0.73)
Length = 551
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = -2
Query: 378 TAELPRQPQVLL*DRVPQAPKTLECSRDRSSERVSLVQRRGHRTSP 241
T +L RQP R+P A T E SR+ + ++SL+QRRGH P
Sbjct: 396 TRQLRRQPSPPR-VRIPTAQSTEETSRNLA--QLSLLQRRGHPPLP 438
>SB_14228| Best HMM Match : Zim (HMM E-Value=3.4)
Length = 406
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 562 FTVETYQIYCYKAVIKCVTTLKPMYTVIMKGIPKAMPR 449
F E +Q Y Y ++ + KP+ T++ K I A PR
Sbjct: 213 FAAERFQQYIYGKEVEVESDQKPLETILDKPIENASPR 250
>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
Length = 1101
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Frame = -3
Query: 428 YCVHNSVKYSSSCVHSKQQSCPGSLRCCCK-----IECPKHPKHWN 306
YCV N KY +CV+ G RC CK C P WN
Sbjct: 746 YCVTNPCKYQGTCVNEL-----GYYRCLCKEGYNGTNCEIDPCKWN 786
>SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 658
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 237 GKVKYDDPDVERVRRAHLN 293
GK+KYDDP E+VR+A N
Sbjct: 373 GKMKYDDPLFEKVRQAKEN 391
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/80 (25%), Positives = 33/80 (41%)
Frame = -2
Query: 447 PVEVMVLLRTQ*CEVFVQLCTLETAELPRQPQVLL*DRVPQAPKTLECSRDRSSERVSLV 268
P+++ VL+R Q L+ AEL P L+ ++P P+ +R E
Sbjct: 54 PIQLPVLVRNQSAHRLFCSIVLKIAELLAIPVELMAKQLPMGPRGPRATRRPKGEYAERR 113
Query: 267 QRRGHRTSPCPLCASRPLHL 208
++ G R C R H+
Sbjct: 114 KKEGIREGLCFALGVRGWHV 133
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 431 FYCVHNSVKYSSSCVHSKQQSCPGSLRCCCKIEC 330
+YC + Y+S+ H C G+ +CC EC
Sbjct: 209 YYCFECKIGYNSADAHH----CEGTCKCCFSTEC 238
>SB_2740| Best HMM Match : DUF866 (HMM E-Value=1.1)
Length = 175
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = +2
Query: 320 GAWGTLSYNST*GCLGNSAVSS-----VHSWTNTSHYCVRSKTITSTGARHRLWYSFHNY 484
G W ++S GC+ ++ + V + T + C + +RLW + HN
Sbjct: 25 GTWQRRGFSSLNGCVTGISIDTGKVLGVEALTVSCKQCKLHDHLDKDSEEYRLWKADHND 84
Query: 485 CVHGFQSS 508
C F+ S
Sbjct: 85 CKANFRGS 92
>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 562 FTVETYQIYCYKAVIKCVTTLKPMYTVIMKGIPKAMPR 449
F E + +Y Y A I +T KP+ ++ K + K PR
Sbjct: 652 FGCERFNMYTYGADIDVMTDHKPLESIFRKPLHKVPPR 689
>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1924
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = +2
Query: 320 GAWGTLSYNST*GCLGNSAVSS-----VHSWTNTSHYCVRSKTITSTGARHRLWYSFHNY 484
G W ++S GC+ ++ + V + T + C + +RLW + HN
Sbjct: 240 GTWQRRGFSSLNGCVTGISIDTGKVLDVEALTVSCKQCKLHGHLDKDSEEYRLWKADHND 299
Query: 485 CVHGFQSS 508
C F+ S
Sbjct: 300 CKANFRGS 307
>SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)
Length = 1358
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 562 FTVETYQIYCYKAVIKCVTTLKPMYTVIMKGIPKAMPR 449
F E + +Y Y A I +T KP+ ++ K + K PR
Sbjct: 842 FGCERFNMYTYGADIDVMTDHKPLESIFRKPLHKVPPR 879
>SB_7636| Best HMM Match : zf-CCHC (HMM E-Value=6.6)
Length = 349
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = +2
Query: 320 GAWGTLSYNST*GCLGNSAVSS-----VHSWTNTSHYCVRSKTITSTGARHRLWYSFHNY 484
G W ++S GC+ ++ + V + T + C + +RLW + HN
Sbjct: 240 GTWQRRGFSSLNGCVTGISIDTGKVLDVEALTVSCKQCKLHGHLDKDSEEYRLWKADHND 299
Query: 485 CVHGFQSS 508
C F+ S
Sbjct: 300 CKANFRGS 307
>SB_4914| Best HMM Match : RVT_1 (HMM E-Value=2.5e-16)
Length = 548
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 562 FTVETYQIYCYKAVIKCVTTLKPMYTVIMKGIPKAMPR 449
F E + +Y Y A I +T KP+ ++ K + K PR
Sbjct: 363 FGCERFNMYTYGADIDVMTDHKPLESIFRKPLHKVPPR 400
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 359 CLGNSAVSSVHSWTNTSHYCVRSKTITSTGARHRLWYSFHNYCVHG 496
CL N ++ V T++++ C + T H + + N C+HG
Sbjct: 961 CLSNPCLNGVCVSTSSTYTCRCTVGFKGTRCEHAMNTCYSNPCIHG 1006
>SB_19100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 422 RSKTITSTGARHRLWYSFHNYCVHGFQSSYTFYNCFVAIYLV 547
RSK + + G R+ Y FHN+ Q+ F YL+
Sbjct: 9 RSKQLIARGCHRRIRYGFHNFSWSKIQNYQFSKQVFSRAYLI 50
>SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)
Length = 1382
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 336 RVPQAPKTLECSRDRSSERVSLVQ-RRGHRTSPCPLC 229
R+P++ +L SRD +RV ++ R G R CPLC
Sbjct: 170 RLPRSKPSLMVSRDDIDQRVEKIRAREGKRV--CPLC 204
>SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)
Length = 91
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 336 RVPQAPKTLECSRDRSSERVSLVQRRGHRTSPCP 235
R ++ CS DR+ R++ +R HR+S P
Sbjct: 18 RTSACSRSRSCSADRTEPRLTAQERHHHRSSSVP 51
>SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)
Length = 269
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 336 RVPQAPKTLECSRDRSSERVSLVQRRGHRTSPCP 235
R ++ CS DR+ R++ +R HR+S P
Sbjct: 18 RTSACSRSRSCSADRTEPRLTAQERHHHRSSSVP 51
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,737,790
Number of Sequences: 59808
Number of extensions: 433314
Number of successful extensions: 1185
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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