Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_P03
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 34 0.064
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 31 0.45
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 31 0.79
At1g14250.1 68414.m01687 nucleoside phosphatase family protein /... 30 1.0
At1g14230.1 68414.m01684 nucleoside phosphatase family protein /... 29 1.8
At5g28650.1 68418.m03508 WRKY family transcription factor DNA-bi... 28 4.2
At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family... 28 4.2
At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase f... 28 4.2
At4g09450.1 68417.m01555 myb family transcription factor contain... 28 5.6
At3g06440.1 68416.m00745 galactosyltransferase family protein co... 28 5.6
At4g32260.1 68417.m04590 ATP synthase family contains Pfam profi... 27 7.4
At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631... 27 7.4
At1g64650.1 68414.m07329 expressed protein 27 7.4
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 27 7.4
At5g17900.1 68418.m02099 expressed protein 27 9.7
At3g49310.1 68416.m05391 expressed protein contains PF05631: Pro... 27 9.7
At1g72900.1 68414.m08432 disease resistance protein (TIR-NBS cla... 27 9.7
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 34.3 bits (75), Expect = 0.064
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 183 VRY-AKKVFANEEDAKRTKGKVKYDDPDVERVRRAHLNDLENIPV 314
+RY +K++FA+E+D GK+ YDD ++++ L + E + V
Sbjct: 761 IRYGSKELFASEDDEAGKSGKIHYDDAAIDKLLDRDLVEAEEVSV 805
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
strong similarity to chromatin remodeling factor CHD3
(PICKLE) [Arabidopsis thaliana] GI:6478518; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 1202
Score = 31.5 bits (68), Expect = 0.45
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 138 ILGLKLLAVTILTGRVRY-AKKVFANEEDAKRTKGKVKYDDPDVER-VRRAHLNDLE 302
++G + L L ++Y +K++F+ E D GK+ YDD +E+ + R H++ +E
Sbjct: 672 VVGKQHLCQDELDDIIKYGSKELFSEENDEAGRSGKIHYDDAAIEQLLDRNHVDAVE 728
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 30.7 bits (66), Expect = 0.79
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 207 ANEEDAKRTKGKVKYDDPDVERVRRAHLNDLENI 308
AN E AK+TKG+ ++ D +R RR D E++
Sbjct: 47 ANGESAKKTKGRGFREEKDSDRQRRLSSRDFESL 80
>At1g14250.1 68414.m01687 nucleoside phosphatase family protein /
GDA1/CD39 family protein low similarity to SP|P97687
Ectonucleoside triphosphate diphosphohydrolase 1 (EC
3.6.1.5) (Ecto-apyrase) {Rattus norvegicus}; contains
Pfam profile PF01150: GDA1/CD39 (nucleoside phosphatase)
family
Length = 488
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 261 DVERVRRAHLNDLENIPVFWVLGALYLTT 347
D ER++ A ENIP+ W LGA L T
Sbjct: 442 DDERIKYASKAGKENIPLDWALGAFILNT 470
>At1g14230.1 68414.m01684 nucleoside phosphatase family protein /
GDA1/CD39 family protein low similarity to SP|P49961
Ectonucleoside triphosphate diphosphohydrolase 1 (EC
3.6.1.5) (Ecto-apyrase) {Homo sapiens}; contains Pfam
profile PF01150: GDA1/CD39 (nucleoside phosphatase)
family
Length = 503
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 261 DVERVRRAHLNDLENIPVFWVLGALYLTTA 350
D ER++ A E+IP+ W LGA L TA
Sbjct: 450 DDERIKYASKAGEEDIPLDWALGAFILNTA 479
>At5g28650.1 68418.m03508 WRKY family transcription factor
DNA-binding protein WRKY3, parsley, PIR:S72445
Length = 330
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 386 HSKQQSCPGSLRCCCKIEC 330
HS++ SC GSL+C K +C
Sbjct: 216 HSRRTSCSGSLKCGSKSKC 234
>At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 1012
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 114 QSYILYSGILGLKLLAVTILTGRVRYAKKV 203
QSY+ ++G+L L + A+T + +V K+V
Sbjct: 738 QSYVSFTGVLMLLITAITFVPSKVSLKKRV 767
>At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase
family protein contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 367
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -3
Query: 485 SNYERNTKGDASRRLR*WFYCVHNSVKYSSSC--VHSKQQSCPGSLRC 348
S ++ DAS L F C+H S SSS V S +C GS C
Sbjct: 121 SFFQEAQMNDASEVLAVIFDCLHRSFAQSSSVSDVDSSDSNCTGSWDC 168
>At4g09450.1 68417.m01555 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 200
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 395 WTNTSHYCVRSKTITSTGARHRLWYS 472
W N S YCV+S+T T + + +++
Sbjct: 113 WKNISRYCVKSRTSTQVASHAQKYFA 138
>At3g06440.1 68416.m00745 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 619
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 120 YILYSGILGLKLLAVTILTGRVRYAKKVFANEEDA 224
++ Y G+L LK +A+ IL +V AK + ++DA
Sbjct: 438 FVDYYGLLSLKTVALCILGTKVIPAKYIMKTDDDA 472
>At4g32260.1 68417.m04590 ATP synthase family contains Pfam profile:
PF00430 ATP synthase B/B' CF(0); identical to cDNA
chloroplast ATP synthase beta chain precursor (atpG)
GI:5730140
Length = 219
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 393 LCTLETAELPRQPQVLL*DRVPQAPKTLECSRDRSSERVSL 271
L +L + + P + Q+ ++PQ PK+L S D S+ +SL
Sbjct: 13 LISLSSNQQPNRVQIPKFAKLPQIPKSLTSSTDLRSKALSL 53
>At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631:
Protein of unknown function (DUF791)
Length = 460
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 538 YCYKAVIKCVTTLKPMYTVIMKG 470
YC ++ C+T P Y V+M G
Sbjct: 108 YCITYILSCITKHSPQYKVLMVG 130
>At1g64650.1 68414.m07329 expressed protein
Length = 462
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 538 YCYKAVIKCVTTLKPMYTVIMKG 470
YC ++ C+T P Y V+M G
Sbjct: 108 YCITYILSCITKHSPQYKVLMVG 130
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles
PF00168: C2 domain; contains PF02893: GRAM domain;
similar to Chain A, Crystal Structure Of Synaptotagmin
Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 295 ISRTFQCFGCLGHSILQQHLRLPGQLCCFECTQLDE 402
+ R +C CL + L Q+ CF+C QL E
Sbjct: 762 VKRERECVMCLSEEMSVIFLPCAHQVLCFKCNQLHE 797
>At5g17900.1 68418.m02099 expressed protein
Length = 435
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +3
Query: 180 RVRYAKKVFANEEDAKRTKGKVKYDDPDVERVRRAHLND 296
R+R A+ ++ EE+++ + + + DD D RR + +
Sbjct: 96 RIRQAEIIYTEEEESRNQENRDEDDDEDALEERRRRIRE 134
>At3g49310.1 68416.m05391 expressed protein contains PF05631:
Protein of unknown function (DUF791)
Length = 460
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 538 YCYKAVIKCVTTLKPMYTVIMKG 470
YC ++ C+T P Y V+M G
Sbjct: 108 YCIVYILSCITKHSPQYKVLMVG 130
>At1g72900.1 68414.m08432 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 363
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 509 NYFETHVHSNYERNTKGDASRR 444
NYFE+H+H + N +G+ S +
Sbjct: 251 NYFESHLHKEFLDNIQGENSSK 272
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,395,005
Number of Sequences: 28952
Number of extensions: 281655
Number of successful extensions: 850
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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