Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_P02
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 33 0.024
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.69
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit... 27 1.6
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 2.1
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 26 4.9
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 26 4.9
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 26 4.9
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 6.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 6.4
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 6.4
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 6.4
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 25 8.5
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 8.5
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 8.5
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 33.5 bits (73), Expect = 0.024
Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 1/94 (1%)
Frame = +3
Query: 255 PAEAHRDSGEEPASGQRCCRSGES-PPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 431
P H + GE GE PP P+ H + + P +
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 333
Query: 432 GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 533
GE P +H EL H H E+ HKG
Sbjct: 334 GEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 0.69
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 106 PEESARRLQHQLSPXTSTPTEKIVLPSAEDVATXKTQKSLFDGIEKFDSSQL 261
P ES+ R + L P +S+ PSA + K ++ F G + D++ +
Sbjct: 235 PRESSERPRLNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNTSV 286
>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +1
Query: 145 PXTSTPTEKIVLPSAEDVATXKTQKSLFDGIEKFDSSQL-KHTE---TQEKNPLPDKDVV 312
P PTE++++P E + T K ++SL E+ D L K T+ +EK ++
Sbjct: 70 PVQGPPTEELIIPPEEMLET-KEEESLKHAREENDDLHLDKETKKRLKKEKKKAARREKE 128
Query: 313 AAEKAHQNLLDGV 351
A KA + GV
Sbjct: 129 EARKAKADTTQGV 141
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +3
Query: 414 DRSYRSGEGKEQIPERHRELRSH*AE----AHGNVREEPAPHKG 533
D S R G +IP+RHR+ R + G RE+P H G
Sbjct: 2 DLSSRLSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYG 45
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 1 FSIPXPHQKYIDSQLACSAELTLPSLKDLP 90
F++P P+ + L+C+ +L SLK++P
Sbjct: 62 FTLPFPNDEGTVFGLSCTRQLNASSLKNIP 91
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 178 LPSAEDVATXKTQKSLFDGIEKFDSSQLKHTE 273
LP +ED+ + SL D + D+SQL E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +1
Query: 154 STPTE-KIVLPSAEDVATXKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAH 330
STP + +I E+++ K + + Q HTE Q P++ V E H
Sbjct: 392 STPPKIEIESKIEEEISVVSKSKEISSSVSSVGKEQ-NHTEKQVAIETPEQQKVEKEDEH 450
Query: 331 QNL 339
NL
Sbjct: 451 LNL 453
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +1
Query: 172 IVLPSAEDVATXKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 300
+ L S ED+ + T+ S+ + + +++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 375 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 470
++HD G S + DR + K++ +HRE
Sbjct: 720 QSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 402 ILFFRRRVLHLSLVEVFNSVQEVL 331
I++ + + LHL LV +FN E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 214 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 300
Q + G + DSS +K T +E PLP+
Sbjct: 3 QTAALHGPKPMDSSHIKVTNVKELKPLPE 31
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 8.5
Identities = 23/86 (26%), Positives = 34/86 (39%)
Frame = +1
Query: 106 PEESARRLQHQLSPXTSTPTEKIVLPSAEDVATXKTQKSLFDGIEKFDSSQLKHTETQEK 285
P+ S +S P+E +V+ S + + + K L + FD TQ
Sbjct: 471 PQPSPSLSTSIMSTPKLNPSESVVVASEKASSPDLSPKLLPSESQIFDEGI---AVTQTP 527
Query: 286 NPLPDKDVVAAEKAHQNLLDGVEHFD 363
N L DKD EKA + D + D
Sbjct: 528 NTLEDKDFKLHEKAVHGIDDIIATVD 553
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +1
Query: 79 KDLPKXRHRPEESARRLQHQLSPXTSTPTEKIVLPSAEDVATXKTQ 216
K LP HRP + H +S TPT V + VA+ Q
Sbjct: 37 KPLPNM-HRPSRDSNSQTHNISFNIGTPTAPTVSTGSPAVASLHDQ 81
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 199 ATXKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 300
+T QKSL D E D++ LK + + LPD
Sbjct: 83 STLDLQKSLIDADENVDANVLKDSASIRHVSLPD 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.128 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,729
Number of Sequences: 5004
Number of extensions: 40033
Number of successful extensions: 121
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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