Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P01
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    27   2.3  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   5.4  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    25   9.5  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   9.5  

>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 280 NSSYYGARILDILDSNNFCILNTGVATRRTQPHEGISAPDLS 155
           ++SY    IL   D + F +L  G+ +   Q   G + P+LS
Sbjct: 340 HNSYVNENILPSYDKHVFDVLWDGIPSENPQLQSGFTTPNLS 381


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 90  HCRM*RKVFSKSVRKLSQRVVNDRSGALIPSWG*VRRVATPVFRMQKLLESS 245
           HC    +   K      Q ++ D S  +IP  G  RR+++P     K+  SS
Sbjct: 219 HCIKKNQPILKQFTSQLQLLIVDESDLVIPDHGRSRRLSSPEILADKIFLSS 270


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 315 ILMHSTKLGVAPIPVTMVQEYWIYWILIT 229
           +L+H   LG+   P+     YW+ +IL+T
Sbjct: 177 LLVHYYGLGLKGAPLATGLSYWLSFILLT 205


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 256 FLHHSNWNWCYPKLGAVH 309
           F  HSN N   PK+G VH
Sbjct: 274 FRKHSNGNLSSPKIGGVH 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,989
Number of Sequences: 5004
Number of extensions: 57049
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)